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| Mutant Information |
|---|
| Mutant Name | FN1250-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1250-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18583607 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 20017975 | C-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 21735282 | A-T | Homo | INTRON | |
| SBS | Chr1 | 32854376 | A-T | Homo | INTRON | |
| SBS | Chr1 | 32854377 | G-T | Homo | SPLICE_SITE_REGION | |
| SBS | Chr1 | 35673367 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 1580534 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 30816214 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 33155664 | G-A | Homo | UTR_5_PRIME | |
| SBS | Chr3 | 22798420 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 30151628 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 36328823 | C-A | Hetero | INTRON | |
| SBS | Chr3 | 36350494 | A-T | Hetero | INTRON | |
| SBS | Chr4 | 1204425 | C-G | Homo | INTERGENIC | |
| SBS | Chr4 | 13852784 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g066400 |
| SBS | Chr5 | 26050940 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 4255897 | T-G | Homo | INTERGENIC | |
| SBS | Chr6 | 17373781 | G-A | Hetero | INTRON | |
| SBS | Chr6 | 20105046 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 742085 | A-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 25638312 | G-C | Homo | UTR_3_PRIME | |
| SBS | Chr7 | 27320040 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 2657323 | G-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 3674198 | A-C | Hetero | INTERGENIC | |
| SBS | Chr8 | 7731984 | T-G | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 16544766 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 16544767 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 10868967 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 13763625 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 2270474 | T-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 2270476 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 6863004 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr12 | 10157480 | C-A | Homo | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 772561 | 772567 | 6 | |
| Deletion | Chr4 | 3871001 | 4570000 | 698999 | 31 |
| Deletion | Chr6 | 4424656 | 4424657 | 1 | |
| Deletion | Chr3 | 5118093 | 5118344 | 251 | |
| Deletion | Chr3 | 12649761 | 12649776 | 15 | OsKitaake03g170600 |
| Deletion | Chr2 | 13232659 | 13232662 | 3 | |
| Deletion | Chr10 | 15035438 | 15035443 | 5 | |
| Deletion | Chr6 | 18588232 | 18588236 | 4 | |
| Deletion | Chr2 | 34629001 | 34638000 | 8999 | 2 |
| Deletion | Chr1 | 38357882 | 38357884 | 2 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 2795134 | 2795138 | 3 | |
| Insertion | Chr10 | 14786066 | 14786069 | 2 | |
| Insertion | Chr12 | 682596 | 682599 | 2 | |
| Insertion | Chr10 | 5735714 | 5735716 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 2603973 | 2604318 | |
| Inversion | Chr3 | 2858744 | 2858954 | |
| Inversion | Chr3 | 9795506 | 9795758 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr7 | 14197220 | Chr2 | 34637646 | |
| Translocation | Chr7 | 14197245 | Chr2 | 34637297 | |
| Translocation | Chr10 | 17929415 | Chr2 | 7441088 | OsKitaake10g125600 |
| Translocation | Chr10 | 17929583 | Chr2 | 7441090 | OsKitaake10g125600 |