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Mutant Information

Mutant Name	FN1255-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1255-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 10739202 C-T Hetero INTERGENIC
SBS Chr2 15754216 A-G Hetero INTERGENIC
SBS Chr2 18968755 G-A Hetero INTERGENIC
SBS Chr2 19178554 A-C Hetero INTRON
SBS Chr2 19911317 C-T Hetero INTERGENIC
SBS Chr2 21313883 G-A Hetero INTERGENIC
SBS Chr2 28500570 A-G Homo INTERGENIC
SBS Chr3 24453728 T-C Hetero INTERGENIC
SBS Chr4 2138099 A-T Hetero INTRON
SBS Chr4 3289352 C-T Hetero INTERGENIC
SBS Chr4 3852950 G-T Homo INTERGENIC
SBS Chr4 6414007 G-A Hetero START_GAINED
SBS Chr4 16770069 C-A Hetero INTERGENIC
SBS Chr4 18636476 C-T Homo INTERGENIC
SBS Chr4 18840724 T-A Homo INTRON
SBS Chr5 6276618 G-C Homo INTERGENIC
SBS Chr5 17438507 C-T Hetero INTERGENIC
SBS Chr5 19913018 T-C Hetero INTERGENIC
SBS Chr6 4666855 T-C Hetero INTERGENIC
SBS Chr6 5354444 T-A Hetero INTRON
SBS Chr6 14248050 G-A Homo INTERGENIC
SBS Chr6 16523801 G-T Homo INTERGENIC
SBS Chr6 19747021 A-G Homo INTERGENIC
SBS Chr6 29988415 G-A Hetero INTERGENIC
SBS Chr7 10396786 G-T Homo INTERGENIC
SBS Chr7 16657875 A-G Homo INTERGENIC
SBS Chr7 26718303 G-A Homo INTERGENIC
SBS Chr8 1597308 A-T Homo INTRON
SBS Chr8 3632685 G-A Hetero UTR_5_PRIME
SBS Chr9 1020364 G-T Hetero INTERGENIC
SBS Chr9 1994236 T-C Hetero INTERGENIC
SBS Chr9 7104720 G-A Hetero INTERGENIC
SBS Chr10 2896443 G-A Hetero INTERGENIC
SBS Chr11 4678220 G-A Hetero INTERGENIC
SBS Chr11 8584779 G-A Homo INTERGENIC
SBS Chr11 20113547 A-G Homo INTERGENIC
SBS Chr11 22785032 C-T Homo INTRON
SBS Chr12 3269607 T-G Hetero INTERGENIC
SBS Chr12 10802512 A-C Hetero INTERGENIC
SBS Chr12 24112065 G-T Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1171757 1171760 3 OsKitaake02g017400
Deletion Chr10 1391726 1391728 2
Deletion Chr12 1570677 1570685 8
Deletion Chr8 1688765 1688776 11
Deletion Chr10 2021001 2033000 11999 OsKitaake10g016000
Deletion Chr5 3480423 3480427 4
Deletion Chr10 5831287 5831289 2
Deletion Chr12 6376001 6633000 256999 29
Deletion Chr3 7099002 7099005 3
Deletion Chr3 8257419 8257437 18
Deletion Chr3 11919114 11919140 26
Deletion Chr3 15035778 15035787 9
Deletion Chr7 18397237 18397238 1
Deletion Chr7 21324957 21324963 6
Deletion Chr7 24174937 24174938 1
Deletion Chr6 27724100 27724103 3
Deletion Chr2 32863008 32863019 11 OsKitaake02g337300

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 34912097 34912117 19
Insertion Chr7 12248929 12248931 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 2021091 2290965 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 2034654 Chr1 22218922
Translocation Chr10 2291000 Chr1 22219357 OsKitaake10g018600
Translocation Chr11 15661315 Chr8 20845071 OsKitaake11g126100
Translocation Chr11 15661322 Chr8 20854891 OsKitaake11g126100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	10739202	C-T	Hetero	INTERGENIC
SBS	Chr2	15754216	A-G	Hetero	INTERGENIC
SBS	Chr2	18968755	G-A	Hetero	INTERGENIC
SBS	Chr2	19178554	A-C	Hetero	INTRON
SBS	Chr2	19911317	C-T	Hetero	INTERGENIC
SBS	Chr2	21313883	G-A	Hetero	INTERGENIC
SBS	Chr2	28500570	A-G	Homo	INTERGENIC
SBS	Chr3	24453728	T-C	Hetero	INTERGENIC
SBS	Chr4	2138099	A-T	Hetero	INTRON
SBS	Chr4	3289352	C-T	Hetero	INTERGENIC
SBS	Chr4	3852950	G-T	Homo	INTERGENIC
SBS	Chr4	6414007	G-A	Hetero	START_GAINED
SBS	Chr4	16770069	C-A	Hetero	INTERGENIC
SBS	Chr4	18636476	C-T	Homo	INTERGENIC
SBS	Chr4	18840724	T-A	Homo	INTRON
SBS	Chr5	6276618	G-C	Homo	INTERGENIC
SBS	Chr5	17438507	C-T	Hetero	INTERGENIC
SBS	Chr5	19913018	T-C	Hetero	INTERGENIC
SBS	Chr6	4666855	T-C	Hetero	INTERGENIC
SBS	Chr6	5354444	T-A	Hetero	INTRON
SBS	Chr6	14248050	G-A	Homo	INTERGENIC
SBS	Chr6	16523801	G-T	Homo	INTERGENIC
SBS	Chr6	19747021	A-G	Homo	INTERGENIC
SBS	Chr6	29988415	G-A	Hetero	INTERGENIC
SBS	Chr7	10396786	G-T	Homo	INTERGENIC
SBS	Chr7	16657875	A-G	Homo	INTERGENIC
SBS	Chr7	26718303	G-A	Homo	INTERGENIC
SBS	Chr8	1597308	A-T	Homo	INTRON
SBS	Chr8	3632685	G-A	Hetero	UTR_5_PRIME
SBS	Chr9	1020364	G-T	Hetero	INTERGENIC
SBS	Chr9	1994236	T-C	Hetero	INTERGENIC
SBS	Chr9	7104720	G-A	Hetero	INTERGENIC
SBS	Chr10	2896443	G-A	Hetero	INTERGENIC
SBS	Chr11	4678220	G-A	Hetero	INTERGENIC
SBS	Chr11	8584779	G-A	Homo	INTERGENIC
SBS	Chr11	20113547	A-G	Homo	INTERGENIC
SBS	Chr11	22785032	C-T	Homo	INTRON
SBS	Chr12	3269607	T-G	Hetero	INTERGENIC
SBS	Chr12	10802512	A-C	Hetero	INTERGENIC
SBS	Chr12	24112065	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1171757	1171760	3	OsKitaake02g017400
Deletion	Chr10	1391726	1391728	2
Deletion	Chr12	1570677	1570685	8
Deletion	Chr8	1688765	1688776	11
Deletion	Chr10	2021001	2033000	11999	OsKitaake10g016000
Deletion	Chr5	3480423	3480427	4
Deletion	Chr10	5831287	5831289	2
Deletion	Chr12	6376001	6633000	256999	29
Deletion	Chr3	7099002	7099005	3
Deletion	Chr3	8257419	8257437	18
Deletion	Chr3	11919114	11919140	26
Deletion	Chr3	15035778	15035787	9
Deletion	Chr7	18397237	18397238	1
Deletion	Chr7	21324957	21324963	6
Deletion	Chr7	24174937	24174938	1
Deletion	Chr6	27724100	27724103	3
Deletion	Chr2	32863008	32863019	11	OsKitaake02g337300

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	2021091	2290965	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes