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| Mutant Information |
|---|
| Mutant Name | FN1257-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1257-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 37
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1735075 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 3276509 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 3276510 | T-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 28074670 | T-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 39992522 | C-T | Homo | INTRON | |
| SBS | Chr2 | 1268733 | A-G | Hetero | INTRON | |
| SBS | Chr2 | 2331904 | A-T | Homo | INTERGENIC | |
| SBS | Chr2 | 20456811 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 29238657 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 32324591 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 32324592 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 324306 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 10702855 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 23024114 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 25950902 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 3709324 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 11948439 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 24932643 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 23980178 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 28157938 | A-C | Hetero | INTRON | |
| SBS | Chr6 | 23805026 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr6 | 24394339 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 24394340 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 4142381 | T-C | Hetero | START_GAINED | |
| SBS | Chr7 | 4154370 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 14680593 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 17301991 | T-G | Homo | INTERGENIC | |
| SBS | Chr8 | 17448328 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 20941209 | A-G | Hetero | INTRON | |
| SBS | Chr8 | 26618216 | C-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 693929 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 22409507 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 22409508 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 3957105 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 3957106 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 8713674 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 10619678 | G-A | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 9006165 | 9006166 | 1 | |
| Deletion | Chr9 | 10494446 | 10494447 | 1 | |
| Deletion | Chr8 | 12288806 | 12288813 | 7 | |
| Deletion | Chr7 | 12917827 | 12917912 | 85 | |
| Deletion | Chr11 | 14118564 | 14118571 | 7 | |
| Deletion | Chr2 | 16659726 | 16659729 | 3 | OsKitaake02g170600 |
| Deletion | Chr9 | 18449240 | 18449250 | 10 | |
| Deletion | Chr6 | 20098250 | 20098317 | 67 | |
| Deletion | Chr7 | 24337166 | 24337167 | 1 | OsKitaake07g216500 |
| Deletion | Chr12 | 25712001 | 25805000 | 92999 | 12 |
| Deletion | Chr12 | 25810001 | 25914000 | 103999 | 5 |
| Deletion | Chr12 | 27023519 | 27023840 | 321 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 15470316 | 15470319 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 13658962 | 14147033 | 2 |
| Inversion | Chr11 | 13658992 | 14150061 | 2 |
| Inversion | Chr8 | 17537068 | 17601287 | |
| Inversion | Chr8 | 17537177 | 17601392 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr9 | 21444518 | Chr4 | 2624693 | |
| Translocation | Chr9 | 21445170 | Chr4 | 2624104 | |
| Translocation | Chr12 | 24795284 | Chr3 | 15836835 | 2 |
| Translocation | Chr12 | 24795555 | Chr3 | 15836824 | 2 |