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Mutant Information

Mutant Name	FN1261-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1261-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1595417 A-G Hetero INTRON
SBS Chr1 2839948 G-C Hetero INTERGENIC
SBS Chr1 3974195 C-A Hetero INTERGENIC
SBS Chr1 9048972 T-A Hetero INTRON
SBS Chr1 37144683 G-A Hetero INTRON
SBS Chr1 42346965 A-G Hetero INTRON
SBS Chr2 1633077 G-C Homo INTERGENIC
SBS Chr2 4727463 T-C Hetero INTRON
SBS Chr2 6287845 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g085000
SBS Chr2 22970445 A-T Hetero INTRON
SBS Chr2 32012214 C-A Hetero INTERGENIC
SBS Chr2 32890399 G-C Hetero INTRON
SBS Chr3 2871339 C-G Hetero INTERGENIC
SBS Chr3 21166609 C-A Hetero INTRON
SBS Chr3 23328910 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g251100
SBS Chr3 32134649 G-A Homo INTERGENIC
SBS Chr4 3584180 C-T Hetero INTERGENIC
SBS Chr4 11064222 A-T Hetero INTERGENIC
SBS Chr4 17228596 T-A Hetero INTERGENIC
SBS Chr4 18656724 G-A Homo INTERGENIC
SBS Chr5 8508294 G-A Hetero INTERGENIC
SBS Chr5 17186452 T-G Hetero INTERGENIC
SBS Chr5 19900985 T-C Hetero INTERGENIC
SBS Chr6 1246367 C-T Hetero INTERGENIC
SBS Chr6 1246368 C-T Hetero INTERGENIC
SBS Chr6 26692674 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g238903
SBS Chr7 8319462 A-G Homo UTR_3_PRIME
SBS Chr7 29077642 A-T Hetero INTERGENIC
SBS Chr8 10541323 C-T Homo INTERGENIC
SBS Chr8 13194508 C-T Homo INTERGENIC
SBS Chr8 15503381 G-T Hetero INTRON
SBS Chr9 7901021 C-A Hetero INTERGENIC
SBS Chr9 18017498 A-T Homo INTERGENIC
SBS Chr10 18876844 C-T Hetero INTERGENIC
SBS Chr10 19274460 A-T Hetero INTERGENIC
SBS Chr10 19274461 A-T Hetero INTERGENIC
SBS Chr10 21786917 G-A Homo INTERGENIC
SBS Chr11 16030989 C-T Hetero INTERGENIC
SBS Chr12 550839 C-T Hetero INTRON
SBS Chr12 4989467 C-A Homo INTERGENIC
SBS Chr12 17210686 G-A Hetero INTERGENIC
SBS Chr12 20259515 T-A Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1967551 1967554 3
Deletion Chr12 2881635 2881638 3
Deletion Chr9 2965072 2965080 8
Deletion Chr12 6283118 6283130 12
Deletion Chr7 8302013 8302020 7
Deletion Chr10 10578975 10578983 8
Deletion Chr7 17325834 17325836 2
Deletion Chr4 17999068 17999069 1
Deletion Chr3 19940552 19940555 3
Deletion Chr1 22889734 22889737 3
Deletion Chr8 23773059 23773070 11
Deletion Chr4 27187841 27187846 5
Deletion Chr5 28552747 28552750 3 OsKitaake05g266800
Deletion Chr3 32850581 32850583 2

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 1609807 1609810 2
Insertion Chr4 9151956 9151959 2
Insertion Chr5 27601101 27601107 5
Insertion Chr7 3194321 3194326 4
Insertion Chr8 26682322 26682326 3
Insertion Chr11 6980489 6980491 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 4425540 4445624

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1595417	A-G	Hetero	INTRON
SBS	Chr1	2839948	G-C	Hetero	INTERGENIC
SBS	Chr1	3974195	C-A	Hetero	INTERGENIC
SBS	Chr1	9048972	T-A	Hetero	INTRON
SBS	Chr1	37144683	G-A	Hetero	INTRON
SBS	Chr1	42346965	A-G	Hetero	INTRON
SBS	Chr2	1633077	G-C	Homo	INTERGENIC
SBS	Chr2	4727463	T-C	Hetero	INTRON
SBS	Chr2	6287845	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g085000
SBS	Chr2	22970445	A-T	Hetero	INTRON
SBS	Chr2	32012214	C-A	Hetero	INTERGENIC
SBS	Chr2	32890399	G-C	Hetero	INTRON
SBS	Chr3	2871339	C-G	Hetero	INTERGENIC
SBS	Chr3	21166609	C-A	Hetero	INTRON
SBS	Chr3	23328910	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g251100
SBS	Chr3	32134649	G-A	Homo	INTERGENIC
SBS	Chr4	3584180	C-T	Hetero	INTERGENIC
SBS	Chr4	11064222	A-T	Hetero	INTERGENIC
SBS	Chr4	17228596	T-A	Hetero	INTERGENIC
SBS	Chr4	18656724	G-A	Homo	INTERGENIC
SBS	Chr5	8508294	G-A	Hetero	INTERGENIC
SBS	Chr5	17186452	T-G	Hetero	INTERGENIC
SBS	Chr5	19900985	T-C	Hetero	INTERGENIC
SBS	Chr6	1246367	C-T	Hetero	INTERGENIC
SBS	Chr6	1246368	C-T	Hetero	INTERGENIC
SBS	Chr6	26692674	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g238903
SBS	Chr7	8319462	A-G	Homo	UTR_3_PRIME
SBS	Chr7	29077642	A-T	Hetero	INTERGENIC
SBS	Chr8	10541323	C-T	Homo	INTERGENIC
SBS	Chr8	13194508	C-T	Homo	INTERGENIC
SBS	Chr8	15503381	G-T	Hetero	INTRON
SBS	Chr9	7901021	C-A	Hetero	INTERGENIC
SBS	Chr9	18017498	A-T	Homo	INTERGENIC
SBS	Chr10	18876844	C-T	Hetero	INTERGENIC
SBS	Chr10	19274460	A-T	Hetero	INTERGENIC
SBS	Chr10	19274461	A-T	Hetero	INTERGENIC
SBS	Chr10	21786917	G-A	Homo	INTERGENIC
SBS	Chr11	16030989	C-T	Hetero	INTERGENIC
SBS	Chr12	550839	C-T	Hetero	INTRON
SBS	Chr12	4989467	C-A	Homo	INTERGENIC
SBS	Chr12	17210686	G-A	Hetero	INTERGENIC
SBS	Chr12	20259515	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1967551	1967554	3
Deletion	Chr12	2881635	2881638	3
Deletion	Chr9	2965072	2965080	8
Deletion	Chr12	6283118	6283130	12
Deletion	Chr7	8302013	8302020	7
Deletion	Chr10	10578975	10578983	8
Deletion	Chr7	17325834	17325836	2
Deletion	Chr4	17999068	17999069	1
Deletion	Chr3	19940552	19940555	3
Deletion	Chr1	22889734	22889737	3
Deletion	Chr8	23773059	23773070	11
Deletion	Chr4	27187841	27187846	5
Deletion	Chr5	28552747	28552750	3	OsKitaake05g266800
Deletion	Chr3	32850581	32850583	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	4425540	4445624

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes