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Mutant Information

Mutant Name	FN1269-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1269-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13354202 A-T Hetero SYNONYMOUS_CODING
SBS Chr1 13354203 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g156200
SBS Chr1 17367902 T-G Hetero INTERGENIC
SBS Chr1 23336240 A-T Hetero INTERGENIC
SBS Chr1 37263929 C-T Hetero INTERGENIC
SBS Chr2 16445369 C-T Homo SYNONYMOUS_CODING
SBS Chr2 16756623 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g171200
SBS Chr3 26001096 G-T Homo INTERGENIC
SBS Chr4 9280011 A-G Hetero INTRON
SBS Chr4 19056469 A-G Hetero INTERGENIC
SBS Chr4 22767122 A-C Hetero INTERGENIC
SBS Chr4 33348790 A-T Homo STOP_GAINED OsKitaake04g273500
SBS Chr5 16184997 T-G Hetero INTERGENIC
SBS Chr5 17333409 T-A Hetero INTRON
SBS Chr5 25096468 C-A Hetero INTERGENIC
SBS Chr6 7582373 G-A Homo INTERGENIC
SBS Chr6 7840047 G-A Homo INTERGENIC
SBS Chr7 222624 T-G Homo INTERGENIC
SBS Chr7 6712595 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g077000
SBS Chr7 6712596 G-A Hetero SYNONYMOUS_CODING
SBS Chr7 7756952 C-T Homo INTERGENIC
SBS Chr8 2157316 G-A Hetero INTERGENIC
SBS Chr8 3010400 C-T Hetero INTRON
SBS Chr8 7752938 C-T Hetero INTERGENIC
SBS Chr8 25980080 A-C Hetero INTERGENIC
SBS Chr8 26776449 C-A Hetero INTERGENIC
SBS Chr9 4986638 G-A Homo SYNONYMOUS_CODING
SBS Chr9 12315501 G-A Homo INTERGENIC
SBS Chr10 13752010 G-T Hetero INTERGENIC
SBS Chr10 18404600 A-T Hetero INTERGENIC
SBS Chr11 1983166 A-G Homo INTERGENIC
SBS Chr11 13707464 T-G Hetero INTERGENIC
SBS Chr11 15342688 C-G Hetero INTERGENIC
SBS Chr12 2264773 G-T Hetero INTERGENIC
SBS Chr12 11313794 T-C Homo INTERGENIC
SBS Chr12 13948297 A-G Homo INTERGENIC
SBS Chr12 20313683 G-T Homo INTERGENIC
SBS Chr12 22071517 G-T Homo INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 5169444 5169455 11
Deletion Chr12 6209197 6209199 2
Deletion Chr4 6378295 6378296 1
Deletion Chr8 8910145 8910146 1
Deletion Chr8 12650177 12650178 1
Deletion Chr9 12911001 12971000 59999 3
Deletion Chr12 13175469 13175478 9
Deletion Chr5 16919937 16919938 1
Deletion Chr8 21740001 21747000 6999 OsKitaake08g164400
Deletion Chr3 32744344 32744353 9

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27538497 27538501 3
Insertion Chr2 32159473 32159478 4
Insertion Chr2 33179657 33179659 1
Insertion Chr11 8261696 8261699 2
Insertion Chr12 16545651 16545655 3

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 12911341 13114039

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 3214535 Chr9 5313112 OsKitaake12g045900
Translocation Chr12 3214540 Chr9 5314667 OsKitaake12g045900

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13354202	A-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	13354203	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g156200
SBS	Chr1	17367902	T-G	Hetero	INTERGENIC
SBS	Chr1	23336240	A-T	Hetero	INTERGENIC
SBS	Chr1	37263929	C-T	Hetero	INTERGENIC
SBS	Chr2	16445369	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr2	16756623	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g171200
SBS	Chr3	26001096	G-T	Homo	INTERGENIC
SBS	Chr4	9280011	A-G	Hetero	INTRON
SBS	Chr4	19056469	A-G	Hetero	INTERGENIC
SBS	Chr4	22767122	A-C	Hetero	INTERGENIC
SBS	Chr4	33348790	A-T	Homo	STOP_GAINED	OsKitaake04g273500
SBS	Chr5	16184997	T-G	Hetero	INTERGENIC
SBS	Chr5	17333409	T-A	Hetero	INTRON
SBS	Chr5	25096468	C-A	Hetero	INTERGENIC
SBS	Chr6	7582373	G-A	Homo	INTERGENIC
SBS	Chr6	7840047	G-A	Homo	INTERGENIC
SBS	Chr7	222624	T-G	Homo	INTERGENIC
SBS	Chr7	6712595	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g077000
SBS	Chr7	6712596	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr7	7756952	C-T	Homo	INTERGENIC
SBS	Chr8	2157316	G-A	Hetero	INTERGENIC
SBS	Chr8	3010400	C-T	Hetero	INTRON
SBS	Chr8	7752938	C-T	Hetero	INTERGENIC
SBS	Chr8	25980080	A-C	Hetero	INTERGENIC
SBS	Chr8	26776449	C-A	Hetero	INTERGENIC
SBS	Chr9	4986638	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	12315501	G-A	Homo	INTERGENIC
SBS	Chr10	13752010	G-T	Hetero	INTERGENIC
SBS	Chr10	18404600	A-T	Hetero	INTERGENIC
SBS	Chr11	1983166	A-G	Homo	INTERGENIC
SBS	Chr11	13707464	T-G	Hetero	INTERGENIC
SBS	Chr11	15342688	C-G	Hetero	INTERGENIC
SBS	Chr12	2264773	G-T	Hetero	INTERGENIC
SBS	Chr12	11313794	T-C	Homo	INTERGENIC
SBS	Chr12	13948297	A-G	Homo	INTERGENIC
SBS	Chr12	20313683	G-T	Homo	INTERGENIC
SBS	Chr12	22071517	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	5169444	5169455	11
Deletion	Chr12	6209197	6209199	2
Deletion	Chr4	6378295	6378296	1
Deletion	Chr8	8910145	8910146	1
Deletion	Chr8	12650177	12650178	1
Deletion	Chr9	12911001	12971000	59999	3
Deletion	Chr12	13175469	13175478	9
Deletion	Chr5	16919937	16919938	1
Deletion	Chr8	21740001	21747000	6999	OsKitaake08g164400
Deletion	Chr3	32744344	32744353	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	12911341	13114039

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes