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Mutant Information

Mutant Name	FN1276-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1276-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12695932 G-A Hetero INTRON
SBS Chr1 12909410 C-T Hetero STOP_GAINED OsKitaake01g154100
SBS Chr1 12909413 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g154100
SBS Chr1 21966438 C-G Homo INTRON
SBS Chr1 24042829 G-T Hetero INTERGENIC
SBS Chr1 24060434 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g231200
SBS Chr1 25303120 G-A Homo INTERGENIC
SBS Chr1 36678533 C-A Hetero INTRON
SBS Chr2 26459157 G-A Hetero INTERGENIC
SBS Chr2 30162559 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g306500
SBS Chr2 30265595 G-A Hetero INTERGENIC
SBS Chr3 7550216 G-A Homo INTERGENIC
SBS Chr3 16205966 G-A Hetero STOP_GAINED OsKitaake03g206400
SBS Chr3 34443608 C-A Hetero UTR_5_PRIME
SBS Chr4 2369690 G-A Hetero INTRON
SBS Chr4 18107840 G-C Hetero INTERGENIC
SBS Chr4 20785306 C-T Hetero INTRON
SBS Chr4 25974246 G-A Hetero INTERGENIC
SBS Chr5 29904004 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 6192446 G-T Hetero INTERGENIC
SBS Chr6 7962025 G-C Hetero INTERGENIC
SBS Chr6 18257328 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g167200
SBS Chr6 18257329 G-A Hetero SYNONYMOUS_CODING
SBS Chr6 20680033 T-C Homo INTERGENIC
SBS Chr8 7984818 G-A Hetero INTERGENIC
SBS Chr8 12177808 C-T Hetero INTERGENIC
SBS Chr8 24668662 T-C Hetero INTERGENIC
SBS Chr8 26631257 T-G Hetero INTERGENIC
SBS Chr8 28745570 A-T Hetero INTRON
SBS Chr9 10219869 C-T Hetero INTERGENIC
SBS Chr9 12965231 G-A Hetero INTERGENIC
SBS Chr10 11318979 T-C Homo INTRON
SBS Chr11 171027 C-T Hetero STOP_GAINED OsKitaake11g000600
SBS Chr11 10253380 A-T Homo INTERGENIC
SBS Chr12 13983620 T-A Homo INTERGENIC
SBS Chr12 14190153 G-C Hetero INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 3658062 3658063 1
Deletion Chr12 4146266 4146275 9
Deletion Chr3 6741641 6741645 4
Deletion Chr5 10928001 10937000 8999
Deletion Chr9 10972027 10972037 10
Deletion Chr11 14619329 14619330 1
Deletion Chr3 16271156 16271158 2
Deletion Chr6 18742799 18742807 8
Deletion Chr1 19261622 19261628 6
Deletion Chr12 21253306 21253416 110
Deletion Chr5 22377849 22377850 1
Deletion Chr8 23304269 23304280 11
Deletion Chr4 23554850 23554851 1
Deletion Chr3 24609001 24653000 43999 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 17353379 17353382 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 18858228 19629767 OsKitaake06g170700
Inversion Chr6 18858240 19629771 OsKitaake06g170700

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 3738636 Chr1 12901725
Translocation Chr11 3738639 Chr1 12901521

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12695932	G-A	Hetero	INTRON
SBS	Chr1	12909410	C-T	Hetero	STOP_GAINED	OsKitaake01g154100
SBS	Chr1	12909413	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g154100
SBS	Chr1	21966438	C-G	Homo	INTRON
SBS	Chr1	24042829	G-T	Hetero	INTERGENIC
SBS	Chr1	24060434	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g231200
SBS	Chr1	25303120	G-A	Homo	INTERGENIC
SBS	Chr1	36678533	C-A	Hetero	INTRON
SBS	Chr2	26459157	G-A	Hetero	INTERGENIC
SBS	Chr2	30162559	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g306500
SBS	Chr2	30265595	G-A	Hetero	INTERGENIC
SBS	Chr3	7550216	G-A	Homo	INTERGENIC
SBS	Chr3	16205966	G-A	Hetero	STOP_GAINED	OsKitaake03g206400
SBS	Chr3	34443608	C-A	Hetero	UTR_5_PRIME
SBS	Chr4	2369690	G-A	Hetero	INTRON
SBS	Chr4	18107840	G-C	Hetero	INTERGENIC
SBS	Chr4	20785306	C-T	Hetero	INTRON
SBS	Chr4	25974246	G-A	Hetero	INTERGENIC
SBS	Chr5	29904004	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	6192446	G-T	Hetero	INTERGENIC
SBS	Chr6	7962025	G-C	Hetero	INTERGENIC
SBS	Chr6	18257328	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g167200
SBS	Chr6	18257329	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr6	20680033	T-C	Homo	INTERGENIC
SBS	Chr8	7984818	G-A	Hetero	INTERGENIC
SBS	Chr8	12177808	C-T	Hetero	INTERGENIC
SBS	Chr8	24668662	T-C	Hetero	INTERGENIC
SBS	Chr8	26631257	T-G	Hetero	INTERGENIC
SBS	Chr8	28745570	A-T	Hetero	INTRON
SBS	Chr9	10219869	C-T	Hetero	INTERGENIC
SBS	Chr9	12965231	G-A	Hetero	INTERGENIC
SBS	Chr10	11318979	T-C	Homo	INTRON
SBS	Chr11	171027	C-T	Hetero	STOP_GAINED	OsKitaake11g000600
SBS	Chr11	10253380	A-T	Homo	INTERGENIC
SBS	Chr12	13983620	T-A	Homo	INTERGENIC
SBS	Chr12	14190153	G-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	3658062	3658063	1
Deletion	Chr12	4146266	4146275	9
Deletion	Chr3	6741641	6741645	4
Deletion	Chr5	10928001	10937000	8999
Deletion	Chr9	10972027	10972037	10
Deletion	Chr11	14619329	14619330	1
Deletion	Chr3	16271156	16271158	2
Deletion	Chr6	18742799	18742807	8
Deletion	Chr1	19261622	19261628	6
Deletion	Chr12	21253306	21253416	110
Deletion	Chr5	22377849	22377850	1
Deletion	Chr8	23304269	23304280	11
Deletion	Chr4	23554850	23554851	1
Deletion	Chr3	24609001	24653000	43999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	18858228	19629767	OsKitaake06g170700
Inversion	Chr6	18858240	19629771	OsKitaake06g170700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes