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Mutant Information

Mutant Name	FN1277-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1277-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 41

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11394110 C-A Homo INTERGENIC
SBS Chr1 16193659 G-A Homo INTERGENIC
SBS Chr1 17261942 G-C Homo INTERGENIC
SBS Chr1 17262097 T-G Hetero INTERGENIC
SBS Chr1 18090992 T-C Homo INTERGENIC
SBS Chr2 1438974 A-T Hetero INTERGENIC
SBS Chr2 7126849 G-T Homo INTERGENIC
SBS Chr2 12310900 C-A Homo INTERGENIC
SBS Chr2 31768049 C-T Hetero INTERGENIC
SBS Chr3 29243490 A-T Hetero INTERGENIC
SBS Chr3 35367049 T-C Homo INTRON
SBS Chr4 11583678 C-T Hetero INTERGENIC
SBS Chr4 28161508 G-A Hetero INTERGENIC
SBS Chr4 36554122 C-T Hetero INTERGENIC
SBS Chr5 27166233 C-T Homo SYNONYMOUS_CODING
SBS Chr5 29764174 T-A Hetero INTRON
SBS Chr6 1294653 G-A Homo INTERGENIC
SBS Chr6 10506619 G-T Homo INTERGENIC
SBS Chr6 29460604 G-A Homo INTERGENIC
SBS Chr7 349784 G-A Hetero INTERGENIC
SBS Chr7 5764351 T-C Homo UTR_3_PRIME
SBS Chr7 13098022 A-T Homo INTERGENIC
SBS Chr7 13098023 G-A Homo INTERGENIC
SBS Chr8 10873822 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g097600
SBS Chr8 10873823 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g097600
SBS Chr8 13617256 C-T Hetero INTERGENIC
SBS Chr8 16338969 G-T Hetero INTERGENIC
SBS Chr8 16338971 G-T Hetero INTERGENIC
SBS Chr8 20696434 G-A Hetero INTERGENIC
SBS Chr9 8964756 G-A Hetero INTERGENIC
SBS Chr10 4826227 A-T Homo INTERGENIC
SBS Chr10 21015488 G-A Hetero INTERGENIC
SBS Chr11 6283323 C-T Hetero INTERGENIC
SBS Chr11 11999659 G-C Homo INTERGENIC
SBS Chr11 12151201 C-A Hetero INTERGENIC
SBS Chr11 16257271 C-T Homo INTERGENIC
SBS Chr11 16929786 C-T Homo INTERGENIC
SBS Chr11 24311376 A-T Hetero INTERGENIC
SBS Chr11 24311377 G-T Hetero INTERGENIC
SBS Chr12 2386267 C-T Hetero INTERGENIC
SBS Chr12 26212036 G-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 779226 779230 4
Deletion Chr10 2629891 2629893 2
Deletion Chr6 2669820 2669821 1
Deletion Chr11 2882986 2882992 6
Deletion Chr2 3229713 3229717 4
Deletion Chr9 5114288 5114434 146
Deletion Chr3 10436244 10436246 2
Deletion Chr4 11574417 11574419 2
Deletion Chr12 11719649 11719804 155
Deletion Chr12 14685401 14685405 4
Deletion Chr5 14928122 14928123 1
Deletion Chr11 19517128 19517134 6
Deletion Chr5 22331977 22331983 6
Deletion Chr5 23010472 23010474 2
Deletion Chr10 23475880 23475885 5
Deletion Chr3 23877193 23877194 1
Deletion Chr1 29342293 29342294 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 24769842 24769852 9

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 15802494 15990226 2
Inversion Chr9 15802505 15990235 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 18857883 Chr5 15154723
Translocation Chr10 22640809 Chr3 3561361

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11394110	C-A	Homo	INTERGENIC
SBS	Chr1	16193659	G-A	Homo	INTERGENIC
SBS	Chr1	17261942	G-C	Homo	INTERGENIC
SBS	Chr1	17262097	T-G	Hetero	INTERGENIC
SBS	Chr1	18090992	T-C	Homo	INTERGENIC
SBS	Chr2	1438974	A-T	Hetero	INTERGENIC
SBS	Chr2	7126849	G-T	Homo	INTERGENIC
SBS	Chr2	12310900	C-A	Homo	INTERGENIC
SBS	Chr2	31768049	C-T	Hetero	INTERGENIC
SBS	Chr3	29243490	A-T	Hetero	INTERGENIC
SBS	Chr3	35367049	T-C	Homo	INTRON
SBS	Chr4	11583678	C-T	Hetero	INTERGENIC
SBS	Chr4	28161508	G-A	Hetero	INTERGENIC
SBS	Chr4	36554122	C-T	Hetero	INTERGENIC
SBS	Chr5	27166233	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr5	29764174	T-A	Hetero	INTRON
SBS	Chr6	1294653	G-A	Homo	INTERGENIC
SBS	Chr6	10506619	G-T	Homo	INTERGENIC
SBS	Chr6	29460604	G-A	Homo	INTERGENIC
SBS	Chr7	349784	G-A	Hetero	INTERGENIC
SBS	Chr7	5764351	T-C	Homo	UTR_3_PRIME
SBS	Chr7	13098022	A-T	Homo	INTERGENIC
SBS	Chr7	13098023	G-A	Homo	INTERGENIC
SBS	Chr8	10873822	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g097600
SBS	Chr8	10873823	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g097600
SBS	Chr8	13617256	C-T	Hetero	INTERGENIC
SBS	Chr8	16338969	G-T	Hetero	INTERGENIC
SBS	Chr8	16338971	G-T	Hetero	INTERGENIC
SBS	Chr8	20696434	G-A	Hetero	INTERGENIC
SBS	Chr9	8964756	G-A	Hetero	INTERGENIC
SBS	Chr10	4826227	A-T	Homo	INTERGENIC
SBS	Chr10	21015488	G-A	Hetero	INTERGENIC
SBS	Chr11	6283323	C-T	Hetero	INTERGENIC
SBS	Chr11	11999659	G-C	Homo	INTERGENIC
SBS	Chr11	12151201	C-A	Hetero	INTERGENIC
SBS	Chr11	16257271	C-T	Homo	INTERGENIC
SBS	Chr11	16929786	C-T	Homo	INTERGENIC
SBS	Chr11	24311376	A-T	Hetero	INTERGENIC
SBS	Chr11	24311377	G-T	Hetero	INTERGENIC
SBS	Chr12	2386267	C-T	Hetero	INTERGENIC
SBS	Chr12	26212036	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	779226	779230	4
Deletion	Chr10	2629891	2629893	2
Deletion	Chr6	2669820	2669821	1
Deletion	Chr11	2882986	2882992	6
Deletion	Chr2	3229713	3229717	4
Deletion	Chr9	5114288	5114434	146
Deletion	Chr3	10436244	10436246	2
Deletion	Chr4	11574417	11574419	2
Deletion	Chr12	11719649	11719804	155
Deletion	Chr12	14685401	14685405	4
Deletion	Chr5	14928122	14928123	1
Deletion	Chr11	19517128	19517134	6
Deletion	Chr5	22331977	22331983	6
Deletion	Chr5	23010472	23010474	2
Deletion	Chr10	23475880	23475885	5
Deletion	Chr3	23877193	23877194	1
Deletion	Chr1	29342293	29342294	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	15802494	15990226	2
Inversion	Chr9	15802505	15990235	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes