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Mutant Information

Mutant Name	FN1281-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1281-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5519427 C-T Hetero INTRON
SBS Chr1 17147872 C-T Hetero INTERGENIC
SBS Chr1 36221796 G-A Hetero INTERGENIC
SBS Chr2 31230975 C-T Homo INTERGENIC
SBS Chr2 31429146 T-C Hetero INTRON
SBS Chr2 31895029 G-A Homo SYNONYMOUS_CODING
SBS Chr2 36299300 A-T Homo INTRON
SBS Chr2 36299302 A-G Homo INTRON
SBS Chr3 12531973 G-A Hetero INTERGENIC
SBS Chr3 16846049 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g210800
SBS Chr3 17645834 C-G Hetero INTERGENIC
SBS Chr3 17795515 C-G Hetero INTERGENIC
SBS Chr3 18857634 A-G Hetero INTERGENIC
SBS Chr3 36890063 A-G Hetero INTRON
SBS Chr5 12950536 T-C Hetero INTERGENIC
SBS Chr5 25335018 G-A Hetero INTRON
SBS Chr6 1301299 C-T Hetero INTERGENIC
SBS Chr6 3433671 C-T Hetero INTERGENIC
SBS Chr6 19423987 T-C Hetero INTERGENIC
SBS Chr6 28296272 G-A Hetero INTRON
SBS Chr6 29179846 T-G Hetero INTRON
SBS Chr8 16750641 G-A Homo INTERGENIC
SBS Chr8 28685639 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g246050
SBS Chr10 22579400 C-T Homo INTERGENIC
SBS Chr11 5075293 A-G Hetero INTRON
SBS Chr11 10832878 T-G Hetero INTERGENIC
SBS Chr12 5728020 G-A Hetero INTERGENIC
SBS Chr12 7122185 T-A Hetero INTERGENIC
SBS Chr12 14449388 T-C Homo INTERGENIC
SBS Chr12 21779264 T-G Homo INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 4552482 4552488 6
Deletion Chr8 6012705 6012713 8
Deletion Chr6 7469016 7469026 10
Deletion Chr4 11011298 11011309 11
Deletion Chr8 26944001 27336000 391999 66
Deletion Chr7 27264391 27264396 5

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 8493493 8493496 2
Insertion Chr12 2563748 2563751 2
Insertion Chr10 4427109 4427111 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 14306608 14432582 OsKitaake09g096200
Inversion Chr12 17267196 17708880
Inversion Chr12 17267201 17708887
Inversion Chr7 19303219 19309841 OsKitaake07g156500
Inversion Chr7 19303237 19309842 OsKitaake07g156500

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5519427	C-T	Hetero	INTRON
SBS	Chr1	17147872	C-T	Hetero	INTERGENIC
SBS	Chr1	36221796	G-A	Hetero	INTERGENIC
SBS	Chr2	31230975	C-T	Homo	INTERGENIC
SBS	Chr2	31429146	T-C	Hetero	INTRON
SBS	Chr2	31895029	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr2	36299300	A-T	Homo	INTRON
SBS	Chr2	36299302	A-G	Homo	INTRON
SBS	Chr3	12531973	G-A	Hetero	INTERGENIC
SBS	Chr3	16846049	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g210800
SBS	Chr3	17645834	C-G	Hetero	INTERGENIC
SBS	Chr3	17795515	C-G	Hetero	INTERGENIC
SBS	Chr3	18857634	A-G	Hetero	INTERGENIC
SBS	Chr3	36890063	A-G	Hetero	INTRON
SBS	Chr5	12950536	T-C	Hetero	INTERGENIC
SBS	Chr5	25335018	G-A	Hetero	INTRON
SBS	Chr6	1301299	C-T	Hetero	INTERGENIC
SBS	Chr6	3433671	C-T	Hetero	INTERGENIC
SBS	Chr6	19423987	T-C	Hetero	INTERGENIC
SBS	Chr6	28296272	G-A	Hetero	INTRON
SBS	Chr6	29179846	T-G	Hetero	INTRON
SBS	Chr8	16750641	G-A	Homo	INTERGENIC
SBS	Chr8	28685639	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g246050
SBS	Chr10	22579400	C-T	Homo	INTERGENIC
SBS	Chr11	5075293	A-G	Hetero	INTRON
SBS	Chr11	10832878	T-G	Hetero	INTERGENIC
SBS	Chr12	5728020	G-A	Hetero	INTERGENIC
SBS	Chr12	7122185	T-A	Hetero	INTERGENIC
SBS	Chr12	14449388	T-C	Homo	INTERGENIC
SBS	Chr12	21779264	T-G	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	4552482	4552488	6
Deletion	Chr8	6012705	6012713	8
Deletion	Chr6	7469016	7469026	10
Deletion	Chr4	11011298	11011309	11
Deletion	Chr8	26944001	27336000	391999	66
Deletion	Chr7	27264391	27264396	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	14306608	14432582	OsKitaake09g096200
Inversion	Chr12	17267196	17708880
Inversion	Chr12	17267201	17708887
Inversion	Chr7	19303219	19309841	OsKitaake07g156500
Inversion	Chr7	19303237	19309842	OsKitaake07g156500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes