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Mutant Information

Mutant Name	FN1295-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1295-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2202707 G-A Hetero INTERGENIC
SBS Chr1 4048589 T-C Homo NON_SYNONYMOUS_CODING OsKitaake01g054600
SBS Chr1 6990370 T-A Homo INTERGENIC
SBS Chr1 10771604 T-A Homo INTERGENIC
SBS Chr1 10771609 A-T Homo INTERGENIC
SBS Chr1 14227380 C-T Homo INTERGENIC
SBS Chr1 37820203 A-C Hetero INTERGENIC
SBS Chr1 37820204 T-A Hetero INTERGENIC
SBS Chr1 43513223 G-A Homo INTERGENIC
SBS Chr1 43696760 C-G Homo INTERGENIC
SBS Chr1 43696763 A-T Homo INTERGENIC
SBS Chr2 9440289 G-A Homo INTERGENIC
SBS Chr2 14565641 C-T Hetero INTERGENIC
SBS Chr3 3129011 T-A Hetero INTERGENIC
SBS Chr3 27569502 T-G Homo INTERGENIC
SBS Chr3 34131413 T-G Hetero UTR_3_PRIME
SBS Chr4 13379244 C-T Hetero INTERGENIC
SBS Chr4 18329561 A-T Hetero INTERGENIC
SBS Chr4 20921436 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake04g114300
SBS Chr5 1822709 G-A Hetero INTERGENIC
SBS Chr5 23044031 C-T Hetero INTRON
SBS Chr7 19752535 G-T Hetero INTERGENIC
SBS Chr8 12118623 C-T Hetero INTERGENIC
SBS Chr8 23146366 G-A Hetero INTERGENIC
SBS Chr9 21196102 A-G Hetero INTERGENIC
SBS Chr10 5039206 C-T Hetero INTERGENIC
SBS Chr10 5560889 C-A Homo INTRON
SBS Chr10 11338115 T-C Hetero INTERGENIC
SBS Chr10 16014007 T-A Homo INTERGENIC
SBS Chr11 7593534 T-C Hetero INTERGENIC
SBS Chr11 18605983 C-A Hetero UTR_3_PRIME
SBS Chr11 27715284 C-G Hetero INTRON
SBS Chr12 14806463 T-A Homo INTRON
SBS Chr12 21813092 G-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1733734 1733749 15
Deletion Chr5 2327733 2327734 1
Deletion Chr5 5737014 5737022 8
Deletion Chr12 8188401 8188409 8
Deletion Chr10 8661186 8661195 9
Deletion Chr4 11251482 11251485 3
Deletion Chr11 11417956 11417960 4
Deletion Chr10 12868832 12868835 3
Deletion Chr6 22272148 22272156 8
Deletion Chr11 22368001 22378000 9999 OsKitaake11g177300
Deletion Chr1 22966568 22966569 1
Deletion Chr5 23691510 23691511 1
Deletion Chr7 26247975 26247976 1
Deletion Chr11 26582999 26583000 1
Deletion Chr3 33481532 33481535 3
Deletion Chr1 38834001 38858000 23999 5
Deletion Chr1 44233607 44233615 8

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 29644383 29644386 2
Insertion Chr4 15074681 15074684 2
Insertion Chr3 8671974 8671978 3
Insertion Chr12 11697894 11697897 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 39337416 39367598 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 22369222 Chr1 39367593 OsKitaake01g424600
Translocation Chr11 22378016 Chr1 39367173 OsKitaake01g424600

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2202707	G-A	Hetero	INTERGENIC
SBS	Chr1	4048589	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g054600
SBS	Chr1	6990370	T-A	Homo	INTERGENIC
SBS	Chr1	10771604	T-A	Homo	INTERGENIC
SBS	Chr1	10771609	A-T	Homo	INTERGENIC
SBS	Chr1	14227380	C-T	Homo	INTERGENIC
SBS	Chr1	37820203	A-C	Hetero	INTERGENIC
SBS	Chr1	37820204	T-A	Hetero	INTERGENIC
SBS	Chr1	43513223	G-A	Homo	INTERGENIC
SBS	Chr1	43696760	C-G	Homo	INTERGENIC
SBS	Chr1	43696763	A-T	Homo	INTERGENIC
SBS	Chr2	9440289	G-A	Homo	INTERGENIC
SBS	Chr2	14565641	C-T	Hetero	INTERGENIC
SBS	Chr3	3129011	T-A	Hetero	INTERGENIC
SBS	Chr3	27569502	T-G	Homo	INTERGENIC
SBS	Chr3	34131413	T-G	Hetero	UTR_3_PRIME
SBS	Chr4	13379244	C-T	Hetero	INTERGENIC
SBS	Chr4	18329561	A-T	Hetero	INTERGENIC
SBS	Chr4	20921436	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g114300
SBS	Chr5	1822709	G-A	Hetero	INTERGENIC
SBS	Chr5	23044031	C-T	Hetero	INTRON
SBS	Chr7	19752535	G-T	Hetero	INTERGENIC
SBS	Chr8	12118623	C-T	Hetero	INTERGENIC
SBS	Chr8	23146366	G-A	Hetero	INTERGENIC
SBS	Chr9	21196102	A-G	Hetero	INTERGENIC
SBS	Chr10	5039206	C-T	Hetero	INTERGENIC
SBS	Chr10	5560889	C-A	Homo	INTRON
SBS	Chr10	11338115	T-C	Hetero	INTERGENIC
SBS	Chr10	16014007	T-A	Homo	INTERGENIC
SBS	Chr11	7593534	T-C	Hetero	INTERGENIC
SBS	Chr11	18605983	C-A	Hetero	UTR_3_PRIME
SBS	Chr11	27715284	C-G	Hetero	INTRON
SBS	Chr12	14806463	T-A	Homo	INTRON
SBS	Chr12	21813092	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1733734	1733749	15
Deletion	Chr5	2327733	2327734	1
Deletion	Chr5	5737014	5737022	8
Deletion	Chr12	8188401	8188409	8
Deletion	Chr10	8661186	8661195	9
Deletion	Chr4	11251482	11251485	3
Deletion	Chr11	11417956	11417960	4
Deletion	Chr10	12868832	12868835	3
Deletion	Chr6	22272148	22272156	8
Deletion	Chr11	22368001	22378000	9999	OsKitaake11g177300
Deletion	Chr1	22966568	22966569	1
Deletion	Chr5	23691510	23691511	1
Deletion	Chr7	26247975	26247976	1
Deletion	Chr11	26582999	26583000	1
Deletion	Chr3	33481532	33481535	3
Deletion	Chr1	38834001	38858000	23999	5
Deletion	Chr1	44233607	44233615	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	39337416	39367598	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes