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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN1310-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1310-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3493050 A-C Hetero UTR_3_PRIME
SBS Chr1 13975187 C-A Hetero INTERGENIC
SBS Chr1 17967136 G-A Hetero INTERGENIC
SBS Chr1 19088471 G-A Hetero INTERGENIC
SBS Chr1 20766177 G-A Hetero INTERGENIC
SBS Chr1 27938245 C-T Homo INTERGENIC
SBS Chr1 27938247 C-T Homo INTERGENIC
SBS Chr1 28892667 C-T Hetero INTERGENIC
SBS Chr1 35267966 C-T Hetero INTERGENIC
SBS Chr2 23719314 T-C Hetero INTERGENIC
SBS Chr3 2828274 A-G Hetero INTERGENIC
SBS Chr3 15295744 C-T Homo INTERGENIC
SBS Chr3 29668298 A-T Homo UTR_3_PRIME
SBS Chr3 29668299 C-T Homo UTR_3_PRIME
SBS Chr4 28665393 G-A Homo INTERGENIC
SBS Chr5 2069609 C-T Hetero INTERGENIC
SBS Chr5 5198204 T-C Hetero INTRON
SBS Chr5 5198208 G-A Hetero INTRON
SBS Chr6 816961 G-A Hetero UTR_3_PRIME
SBS Chr6 26940742 C-T Hetero INTERGENIC
SBS Chr7 6914585 C-A Homo INTERGENIC
SBS Chr7 12215042 C-T Homo INTERGENIC
SBS Chr8 2419132 G-T Hetero INTERGENIC
SBS Chr8 25001842 G-A Hetero INTERGENIC
SBS Chr9 2959446 C-T Hetero INTRON
SBS Chr10 16314417 T-A Hetero INTERGENIC
SBS Chr11 11201108 G-A Hetero INTERGENIC
SBS Chr11 12483071 C-A Hetero INTERGENIC
SBS Chr11 13970180 A-G Hetero INTRON
SBS Chr11 27706681 C-T Homo INTRON
SBS Chr12 7415261 C-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 9590221 9590225 4
Deletion Chr3 9796329 9796333 4
Deletion Chr9 16912451 16912520 69
Deletion Chr6 22475214 22475216 2
Deletion Chr7 22588681 22588749 68
Deletion Chr2 23216469 23216470 1
Deletion Chr5 23223587 23223594 7 OsKitaake05g193900
Deletion Chr6 29136001 29158000 21999 7
Deletion Chr4 29578710 29578724 14
Deletion Chr1 37159865 37159867 2

Insertions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 33166163 33166166 2
Insertion Chr2 34343117 34343119 1
Insertion Chr3 31988289 31988292 2
Insertion Chr4 3416809 3416812 2
Insertion Chr8 26682322 26682325 2
Insertion Chr9 7117534 7117537 2
Insertion Chr9 20281083 20281086 2
Insertion Chr11 2634256 2634259 2
Insertion Chr12 1677486 1677489 2
Insertion Chr12 10016519 10016522 2
Insertion Chr6 11349 11351 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3493050	A-C	Hetero	UTR_3_PRIME
SBS	Chr1	13975187	C-A	Hetero	INTERGENIC
SBS	Chr1	17967136	G-A	Hetero	INTERGENIC
SBS	Chr1	19088471	G-A	Hetero	INTERGENIC
SBS	Chr1	20766177	G-A	Hetero	INTERGENIC
SBS	Chr1	27938245	C-T	Homo	INTERGENIC
SBS	Chr1	27938247	C-T	Homo	INTERGENIC
SBS	Chr1	28892667	C-T	Hetero	INTERGENIC
SBS	Chr1	35267966	C-T	Hetero	INTERGENIC
SBS	Chr2	23719314	T-C	Hetero	INTERGENIC
SBS	Chr3	2828274	A-G	Hetero	INTERGENIC
SBS	Chr3	15295744	C-T	Homo	INTERGENIC
SBS	Chr3	29668298	A-T	Homo	UTR_3_PRIME
SBS	Chr3	29668299	C-T	Homo	UTR_3_PRIME
SBS	Chr4	28665393	G-A	Homo	INTERGENIC
SBS	Chr5	2069609	C-T	Hetero	INTERGENIC
SBS	Chr5	5198204	T-C	Hetero	INTRON
SBS	Chr5	5198208	G-A	Hetero	INTRON
SBS	Chr6	816961	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	26940742	C-T	Hetero	INTERGENIC
SBS	Chr7	6914585	C-A	Homo	INTERGENIC
SBS	Chr7	12215042	C-T	Homo	INTERGENIC
SBS	Chr8	2419132	G-T	Hetero	INTERGENIC
SBS	Chr8	25001842	G-A	Hetero	INTERGENIC
SBS	Chr9	2959446	C-T	Hetero	INTRON
SBS	Chr10	16314417	T-A	Hetero	INTERGENIC
SBS	Chr11	11201108	G-A	Hetero	INTERGENIC
SBS	Chr11	12483071	C-A	Hetero	INTERGENIC
SBS	Chr11	13970180	A-G	Hetero	INTRON
SBS	Chr11	27706681	C-T	Homo	INTRON
SBS	Chr12	7415261	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	9590221	9590225	4
Deletion	Chr3	9796329	9796333	4
Deletion	Chr9	16912451	16912520	69
Deletion	Chr6	22475214	22475216	2
Deletion	Chr7	22588681	22588749	68
Deletion	Chr2	23216469	23216470	1
Deletion	Chr5	23223587	23223594	7	OsKitaake05g193900
Deletion	Chr6	29136001	29158000	21999	7
Deletion	Chr4	29578710	29578724	14
Deletion	Chr1	37159865	37159867	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes