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Mutant Information

Mutant Name	FN1314-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1314-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4729870 C-A Homo INTERGENIC
SBS Chr1 8467794 A-G Hetero INTERGENIC
SBS Chr1 11852675 T-A Hetero INTERGENIC
SBS Chr1 13439892 G-A Hetero INTERGENIC
SBS Chr1 33695096 C-A Hetero INTERGENIC
SBS Chr1 40577178 A-G Hetero UTR_3_PRIME
SBS Chr2 6455080 G-T Hetero INTERGENIC
SBS Chr2 29888287 A-G Hetero INTERGENIC
SBS Chr2 33136879 C-T Hetero INTERGENIC
SBS Chr2 36490314 A-T Hetero INTERGENIC
SBS Chr3 19623764 A-T Homo INTERGENIC
SBS Chr4 21423063 G-A Homo INTERGENIC
SBS Chr6 15113946 G-A Hetero INTERGENIC
SBS Chr6 18472524 C-T Homo INTERGENIC
SBS Chr7 7238208 C-T Homo INTERGENIC
SBS Chr7 27372263 G-A Hetero INTERGENIC
SBS Chr8 15338872 A-G Hetero INTRON
SBS Chr8 23633546 T-A Hetero INTERGENIC
SBS Chr8 24496598 G-A Hetero UTR_5_PRIME
SBS Chr8 24496599 A-T Hetero UTR_5_PRIME
SBS Chr9 1809296 G-A Homo INTERGENIC
SBS Chr9 14157501 T-G Homo INTERGENIC
SBS Chr9 15833858 C-T Homo INTERGENIC
SBS Chr10 11362118 C-T Hetero INTERGENIC
SBS Chr10 12457652 C-T Hetero INTERGENIC
SBS Chr11 21573270 G-A Hetero SYNONYMOUS_CODING
SBS Chr12 12206862 A-G Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 3220553 3220555 2
Deletion Chr12 3305617 3305631 14
Deletion Chr10 8668041 8668050 9
Deletion Chr11 9116792 9116794 2
Deletion Chr7 12417588 12417590 2 OsKitaake07g111000
Deletion Chr2 17289828 17289832 4
Deletion Chr2 18681645 18681647 2
Deletion Chr1 21788083 21788089 6
Deletion Chr12 22720076 22720080 4 OsKitaake12g179100
Deletion Chr3 25996091 25996092 1
Deletion Chr6 26277292 26277293 1
Deletion Chr1 28932747 28932751 4
Deletion Chr2 30907001 30923000 15999 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 18234954 18234962 7
Insertion Chr10 16210185 16210187 1
Insertion Chr12 1093514 1093517 2
Insertion Chr12 5762436 5762439 2
Insertion Chr12 11697894 11697897 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 24844365 25313278
Inversion Chr12 24844382 25313285

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 30341013 Chr2 32106597 OsKitaake04g233400
Translocation Chr4 30341938 Chr2 30921731 OsKitaake04g233400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4729870	C-A	Homo	INTERGENIC
SBS	Chr1	8467794	A-G	Hetero	INTERGENIC
SBS	Chr1	11852675	T-A	Hetero	INTERGENIC
SBS	Chr1	13439892	G-A	Hetero	INTERGENIC
SBS	Chr1	33695096	C-A	Hetero	INTERGENIC
SBS	Chr1	40577178	A-G	Hetero	UTR_3_PRIME
SBS	Chr2	6455080	G-T	Hetero	INTERGENIC
SBS	Chr2	29888287	A-G	Hetero	INTERGENIC
SBS	Chr2	33136879	C-T	Hetero	INTERGENIC
SBS	Chr2	36490314	A-T	Hetero	INTERGENIC
SBS	Chr3	19623764	A-T	Homo	INTERGENIC
SBS	Chr4	21423063	G-A	Homo	INTERGENIC
SBS	Chr6	15113946	G-A	Hetero	INTERGENIC
SBS	Chr6	18472524	C-T	Homo	INTERGENIC
SBS	Chr7	7238208	C-T	Homo	INTERGENIC
SBS	Chr7	27372263	G-A	Hetero	INTERGENIC
SBS	Chr8	15338872	A-G	Hetero	INTRON
SBS	Chr8	23633546	T-A	Hetero	INTERGENIC
SBS	Chr8	24496598	G-A	Hetero	UTR_5_PRIME
SBS	Chr8	24496599	A-T	Hetero	UTR_5_PRIME
SBS	Chr9	1809296	G-A	Homo	INTERGENIC
SBS	Chr9	14157501	T-G	Homo	INTERGENIC
SBS	Chr9	15833858	C-T	Homo	INTERGENIC
SBS	Chr10	11362118	C-T	Hetero	INTERGENIC
SBS	Chr10	12457652	C-T	Hetero	INTERGENIC
SBS	Chr11	21573270	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr12	12206862	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	3220553	3220555	2
Deletion	Chr12	3305617	3305631	14
Deletion	Chr10	8668041	8668050	9
Deletion	Chr11	9116792	9116794	2
Deletion	Chr7	12417588	12417590	2	OsKitaake07g111000
Deletion	Chr2	17289828	17289832	4
Deletion	Chr2	18681645	18681647	2
Deletion	Chr1	21788083	21788089	6
Deletion	Chr12	22720076	22720080	4	OsKitaake12g179100
Deletion	Chr3	25996091	25996092	1
Deletion	Chr6	26277292	26277293	1
Deletion	Chr1	28932747	28932751	4
Deletion	Chr2	30907001	30923000	15999	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	24844365	25313278
Inversion	Chr12	24844382	25313285

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes