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Mutant Information

Mutant Name	FN1318-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1318-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1278522 G-A Hetero INTERGENIC
SBS Chr1 2915926 G-A Hetero INTERGENIC
SBS Chr1 9724279 G-A Homo INTERGENIC
SBS Chr1 9839548 T-C Homo INTERGENIC
SBS Chr1 10777547 T-A Homo INTERGENIC
SBS Chr1 10777548 G-A Homo INTERGENIC
SBS Chr1 14360345 G-A Hetero INTERGENIC
SBS Chr2 15161354 C-T Homo INTERGENIC
SBS Chr2 24818195 A-G Hetero INTERGENIC
SBS Chr3 20618467 G-T Hetero INTERGENIC
SBS Chr3 20618468 A-T Hetero INTERGENIC
SBS Chr3 22745933 A-G Hetero INTERGENIC
SBS Chr3 26472666 C-T Hetero INTERGENIC
SBS Chr4 3295164 G-A Hetero INTERGENIC
SBS Chr4 8502687 G-A Hetero INTERGENIC
SBS Chr4 30153171 G-A Homo INTERGENIC
SBS Chr5 17438088 G-A Hetero INTERGENIC
SBS Chr5 18318985 C-G Homo INTERGENIC
SBS Chr5 29638193 T-A Homo UTR_3_PRIME
SBS Chr5 29638197 C-A Homo UTR_3_PRIME
SBS Chr6 2836288 C-T Hetero INTERGENIC
SBS Chr7 4965384 C-A Hetero INTERGENIC
SBS Chr7 7442190 A-T Hetero UTR_3_PRIME
SBS Chr7 8144268 A-T Hetero INTERGENIC
SBS Chr8 18358651 G-C Hetero INTERGENIC
SBS Chr8 20868523 T-A Hetero INTRON
SBS Chr9 1741047 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g009600
SBS Chr9 19374485 G-A Hetero INTERGENIC
SBS Chr10 5950438 C-A Hetero INTERGENIC
SBS Chr10 12920611 A-C Hetero INTERGENIC
SBS Chr10 13219901 G-A Hetero INTERGENIC
SBS Chr11 10804561 C-G Homo INTERGENIC
SBS Chr12 1087419 G-A Hetero INTERGENIC
SBS Chr12 2951409 A-C Hetero INTERGENIC
SBS Chr12 8007024 C-G Hetero INTERGENIC
SBS Chr12 15823933 C-T Hetero INTERGENIC
SBS Chr12 16029194 C-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1413243 1413245 2
Deletion Chr7 2953001 3235000 281999 35
Deletion Chr7 3110067 3110111 44
Deletion Chr1 6271330 6271340 10
Deletion Chr7 7958270 7958272 2
Deletion Chr1 9408068 9408070 2
Deletion Chr2 10683318 10683319 1
Deletion Chr8 22472168 22472178 10
Deletion Chr1 29492387 29492388 1 OsKitaake01g289000
Deletion Chr4 30095077 30095087 10
Deletion Chr1 31291379 31291386 7
Deletion Chr1 34247097 34247098 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 4854931 4854934 2
Insertion Chr5 22628802 22628805 2
Insertion Chr7 5656390 5656393 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 8387136 8391841
Inversion Chr11 8391845 8808170 OsKitaake11g094800
Inversion Chr11 8406972 9078219
Inversion Chr11 8808164 9078216 OsKitaake11g094800

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 23029065 Chr7 3236367 OsKitaake11g182800
Translocation Chr11 23029607 Chr7 2951979 OsKitaake11g182800
Translocation Chr6 29871269 Chr5 21893051 2
Translocation Chr6 29872351 Chr5 21893049 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1278522	G-A	Hetero	INTERGENIC
SBS	Chr1	2915926	G-A	Hetero	INTERGENIC
SBS	Chr1	9724279	G-A	Homo	INTERGENIC
SBS	Chr1	9839548	T-C	Homo	INTERGENIC
SBS	Chr1	10777547	T-A	Homo	INTERGENIC
SBS	Chr1	10777548	G-A	Homo	INTERGENIC
SBS	Chr1	14360345	G-A	Hetero	INTERGENIC
SBS	Chr2	15161354	C-T	Homo	INTERGENIC
SBS	Chr2	24818195	A-G	Hetero	INTERGENIC
SBS	Chr3	20618467	G-T	Hetero	INTERGENIC
SBS	Chr3	20618468	A-T	Hetero	INTERGENIC
SBS	Chr3	22745933	A-G	Hetero	INTERGENIC
SBS	Chr3	26472666	C-T	Hetero	INTERGENIC
SBS	Chr4	3295164	G-A	Hetero	INTERGENIC
SBS	Chr4	8502687	G-A	Hetero	INTERGENIC
SBS	Chr4	30153171	G-A	Homo	INTERGENIC
SBS	Chr5	17438088	G-A	Hetero	INTERGENIC
SBS	Chr5	18318985	C-G	Homo	INTERGENIC
SBS	Chr5	29638193	T-A	Homo	UTR_3_PRIME
SBS	Chr5	29638197	C-A	Homo	UTR_3_PRIME
SBS	Chr6	2836288	C-T	Hetero	INTERGENIC
SBS	Chr7	4965384	C-A	Hetero	INTERGENIC
SBS	Chr7	7442190	A-T	Hetero	UTR_3_PRIME
SBS	Chr7	8144268	A-T	Hetero	INTERGENIC
SBS	Chr8	18358651	G-C	Hetero	INTERGENIC
SBS	Chr8	20868523	T-A	Hetero	INTRON
SBS	Chr9	1741047	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g009600
SBS	Chr9	19374485	G-A	Hetero	INTERGENIC
SBS	Chr10	5950438	C-A	Hetero	INTERGENIC
SBS	Chr10	12920611	A-C	Hetero	INTERGENIC
SBS	Chr10	13219901	G-A	Hetero	INTERGENIC
SBS	Chr11	10804561	C-G	Homo	INTERGENIC
SBS	Chr12	1087419	G-A	Hetero	INTERGENIC
SBS	Chr12	2951409	A-C	Hetero	INTERGENIC
SBS	Chr12	8007024	C-G	Hetero	INTERGENIC
SBS	Chr12	15823933	C-T	Hetero	INTERGENIC
SBS	Chr12	16029194	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1413243	1413245	2
Deletion	Chr7	2953001	3235000	281999	35
Deletion	Chr7	3110067	3110111	44
Deletion	Chr1	6271330	6271340	10
Deletion	Chr7	7958270	7958272	2
Deletion	Chr1	9408068	9408070	2
Deletion	Chr2	10683318	10683319	1
Deletion	Chr8	22472168	22472178	10
Deletion	Chr1	29492387	29492388	1	OsKitaake01g289000
Deletion	Chr4	30095077	30095087	10
Deletion	Chr1	31291379	31291386	7
Deletion	Chr1	34247097	34247098	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	8387136	8391841
Inversion	Chr11	8391845	8808170	OsKitaake11g094800
Inversion	Chr11	8406972	9078219
Inversion	Chr11	8808164	9078216	OsKitaake11g094800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes