Search Kitaake

Mutant Information

Mutant Name	FN1319-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1319-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1517420 A-T Homo INTERGENIC
SBS Chr1 11441713 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake01g139700
SBS Chr1 13292527 T-A Hetero INTERGENIC
SBS Chr1 15033192 T-A Hetero INTRON
SBS Chr1 15352309 C-G Hetero INTERGENIC
SBS Chr1 15641999 G-T Hetero INTERGENIC
SBS Chr1 23331954 C-T Hetero INTERGENIC
SBS Chr1 32749334 G-A Hetero INTERGENIC
SBS Chr1 41442773 A-G Homo NON_SYNONYMOUS_CODING OsKitaake01g452600
SBS Chr2 13813426 T-A Hetero INTERGENIC
SBS Chr2 27151498 G-A Homo INTERGENIC
SBS Chr3 33718233 A-T Homo INTERGENIC
SBS Chr3 33718234 A-T Homo INTERGENIC
SBS Chr3 33718238 T-C Homo INTERGENIC
SBS Chr3 36108521 A-G Homo NON_SYNONYMOUS_CODING OsKitaake03g399100
SBS Chr3 37093349 A-T Hetero INTRON
SBS Chr4 2752504 G-A Hetero INTERGENIC
SBS Chr4 3154580 A-T Homo INTERGENIC
SBS Chr4 7775339 G-T Hetero INTERGENIC
SBS Chr4 8970834 C-T Hetero INTERGENIC
SBS Chr4 9886089 A-T Hetero INTERGENIC
SBS Chr4 20650864 T-A Hetero INTERGENIC
SBS Chr5 11215517 G-T Hetero INTERGENIC
SBS Chr5 20607208 A-C Hetero INTERGENIC
SBS Chr5 20607209 A-T Hetero INTERGENIC
SBS Chr5 21433211 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake05g174000
SBS Chr5 25382005 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g221700
SBS Chr6 25068845 A-G Homo INTERGENIC
SBS Chr7 7379137 C-T Hetero INTERGENIC
SBS Chr7 15843115 A-T Homo INTERGENIC
SBS Chr8 13065279 G-A Homo INTERGENIC
SBS Chr8 18766396 C-G Homo INTERGENIC
SBS Chr8 27512711 A-G Hetero INTERGENIC
SBS Chr9 1505362 G-T Hetero INTERGENIC
SBS Chr9 6278491 T-A Hetero INTERGENIC
SBS Chr9 6278492 C-T Hetero INTERGENIC
SBS Chr9 6278494 C-A Hetero INTERGENIC
SBS Chr9 6776209 T-C Hetero INTERGENIC
SBS Chr10 7592877 G-A Homo INTERGENIC
SBS Chr10 8915244 G-T Homo INTERGENIC
SBS Chr10 11762006 G-T Homo INTERGENIC
SBS Chr11 7517044 T-A Hetero INTERGENIC
SBS Chr11 10433530 C-T Homo INTERGENIC
SBS Chr11 12595573 A-G Hetero INTERGENIC
SBS Chr11 13831272 G-T Hetero INTERGENIC
SBS Chr11 21689548 C-G Hetero INTERGENIC
SBS Chr11 25836513 C-T Homo INTERGENIC
SBS Chr12 3291537 A-G Hetero INTERGENIC
SBS Chr12 4324232 G-A Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2663001 2773000 109999 10
Deletion Chr2 3062680 3062682 2 OsKitaake02g043651
Deletion Chr4 3342309 3342312 3
Deletion Chr2 19076339 19076345 6
Deletion Chr1 25163877 25163878 1
Deletion Chr7 25945502 25945503 1
Deletion Chr4 34652842 34652843 1
Deletion Chr3 35160104 35160107 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 19697675 19697678 2
Insertion Chr2 6755607 6755610 2
Insertion Chr6 2804376 2804379 2
Insertion Chr6 19125021 19125024 2
Insertion Chr8 24469783 24469786 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 21926658 22237728 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 26472846 Chr1 22237731 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1517420	A-T	Homo	INTERGENIC
SBS	Chr1	11441713	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g139700
SBS	Chr1	13292527	T-A	Hetero	INTERGENIC
SBS	Chr1	15033192	T-A	Hetero	INTRON
SBS	Chr1	15352309	C-G	Hetero	INTERGENIC
SBS	Chr1	15641999	G-T	Hetero	INTERGENIC
SBS	Chr1	23331954	C-T	Hetero	INTERGENIC
SBS	Chr1	32749334	G-A	Hetero	INTERGENIC
SBS	Chr1	41442773	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g452600
SBS	Chr2	13813426	T-A	Hetero	INTERGENIC
SBS	Chr2	27151498	G-A	Homo	INTERGENIC
SBS	Chr3	33718233	A-T	Homo	INTERGENIC
SBS	Chr3	33718234	A-T	Homo	INTERGENIC
SBS	Chr3	33718238	T-C	Homo	INTERGENIC
SBS	Chr3	36108521	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g399100
SBS	Chr3	37093349	A-T	Hetero	INTRON
SBS	Chr4	2752504	G-A	Hetero	INTERGENIC
SBS	Chr4	3154580	A-T	Homo	INTERGENIC
SBS	Chr4	7775339	G-T	Hetero	INTERGENIC
SBS	Chr4	8970834	C-T	Hetero	INTERGENIC
SBS	Chr4	9886089	A-T	Hetero	INTERGENIC
SBS	Chr4	20650864	T-A	Hetero	INTERGENIC
SBS	Chr5	11215517	G-T	Hetero	INTERGENIC
SBS	Chr5	20607208	A-C	Hetero	INTERGENIC
SBS	Chr5	20607209	A-T	Hetero	INTERGENIC
SBS	Chr5	21433211	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g174000
SBS	Chr5	25382005	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g221700
SBS	Chr6	25068845	A-G	Homo	INTERGENIC
SBS	Chr7	7379137	C-T	Hetero	INTERGENIC
SBS	Chr7	15843115	A-T	Homo	INTERGENIC
SBS	Chr8	13065279	G-A	Homo	INTERGENIC
SBS	Chr8	18766396	C-G	Homo	INTERGENIC
SBS	Chr8	27512711	A-G	Hetero	INTERGENIC
SBS	Chr9	1505362	G-T	Hetero	INTERGENIC
SBS	Chr9	6278491	T-A	Hetero	INTERGENIC
SBS	Chr9	6278492	C-T	Hetero	INTERGENIC
SBS	Chr9	6278494	C-A	Hetero	INTERGENIC
SBS	Chr9	6776209	T-C	Hetero	INTERGENIC
SBS	Chr10	7592877	G-A	Homo	INTERGENIC
SBS	Chr10	8915244	G-T	Homo	INTERGENIC
SBS	Chr10	11762006	G-T	Homo	INTERGENIC
SBS	Chr11	7517044	T-A	Hetero	INTERGENIC
SBS	Chr11	10433530	C-T	Homo	INTERGENIC
SBS	Chr11	12595573	A-G	Hetero	INTERGENIC
SBS	Chr11	13831272	G-T	Hetero	INTERGENIC
SBS	Chr11	21689548	C-G	Hetero	INTERGENIC
SBS	Chr11	25836513	C-T	Homo	INTERGENIC
SBS	Chr12	3291537	A-G	Hetero	INTERGENIC
SBS	Chr12	4324232	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2663001	2773000	109999	10
Deletion	Chr2	3062680	3062682	2	OsKitaake02g043651
Deletion	Chr4	3342309	3342312	3
Deletion	Chr2	19076339	19076345	6
Deletion	Chr1	25163877	25163878	1
Deletion	Chr7	25945502	25945503	1
Deletion	Chr4	34652842	34652843	1
Deletion	Chr3	35160104	35160107	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	21926658	22237728	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes