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Mutant Information

Mutant Name	FN1322-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1322-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 21

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20279006 A-C Homo INTERGENIC
SBS Chr2 2159315 G-A Hetero INTERGENIC
SBS Chr2 9623293 G-A Hetero UTR_5_PRIME
SBS Chr2 20288008 T-A Homo INTERGENIC
SBS Chr2 21297722 A-T Hetero INTRON
SBS Chr3 19775397 G-A Hetero INTERGENIC
SBS Chr3 30553133 A-G Hetero INTERGENIC
SBS Chr5 10455863 G-C Homo INTERGENIC
SBS Chr5 22159757 G-T Hetero INTERGENIC
SBS Chr6 260744 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g001800
SBS Chr7 17520695 C-G Hetero INTERGENIC
SBS Chr7 20930493 C-T Homo INTERGENIC
SBS Chr8 28056392 T-A Hetero UTR_3_PRIME
SBS Chr9 10203861 A-G Hetero UTR_3_PRIME
SBS Chr9 12324563 A-G Hetero INTERGENIC
SBS Chr9 12353504 A-G Hetero INTERGENIC
SBS Chr9 15145436 A-T Hetero INTRON
SBS Chr10 13145000 C-T Homo INTERGENIC
SBS Chr11 6479195 G-T Homo INTERGENIC
SBS Chr11 11951358 T-C Homo INTERGENIC
SBS Chr11 20695737 T-C Hetero SYNONYMOUS_CODING

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 1751419 1751425 6
Deletion Chr12 3225700 3225701 1
Deletion Chr2 11805001 11990000 184999 12
Deletion Chr7 11896083 11896086 3
Deletion Chr7 17300212 17300215 3
Deletion Chr9 19134966 19134969 3
Deletion Chr2 19903001 19987000 83999 5
Deletion Chr2 21244016 21244020 4
Deletion Chr2 22074356 22074360 4
Deletion Chr4 25580415 25580438 23
Deletion Chr2 26645001 26691000 45999 6
Deletion Chr6 30852335 30852336 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 4098712 4098715 2
Insertion Chr9 19668113 19668116 2
Insertion Chr8 2708292 2708294 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 11807317 12467595
Inversion Chr2 12466461 12467596

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 5271194 Chr2 12465567
Translocation Chr8 5271205 Chr2 12466452

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20279006	A-C	Homo	INTERGENIC
SBS	Chr2	2159315	G-A	Hetero	INTERGENIC
SBS	Chr2	9623293	G-A	Hetero	UTR_5_PRIME
SBS	Chr2	20288008	T-A	Homo	INTERGENIC
SBS	Chr2	21297722	A-T	Hetero	INTRON
SBS	Chr3	19775397	G-A	Hetero	INTERGENIC
SBS	Chr3	30553133	A-G	Hetero	INTERGENIC
SBS	Chr5	10455863	G-C	Homo	INTERGENIC
SBS	Chr5	22159757	G-T	Hetero	INTERGENIC
SBS	Chr6	260744	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g001800
SBS	Chr7	17520695	C-G	Hetero	INTERGENIC
SBS	Chr7	20930493	C-T	Homo	INTERGENIC
SBS	Chr8	28056392	T-A	Hetero	UTR_3_PRIME
SBS	Chr9	10203861	A-G	Hetero	UTR_3_PRIME
SBS	Chr9	12324563	A-G	Hetero	INTERGENIC
SBS	Chr9	12353504	A-G	Hetero	INTERGENIC
SBS	Chr9	15145436	A-T	Hetero	INTRON
SBS	Chr10	13145000	C-T	Homo	INTERGENIC
SBS	Chr11	6479195	G-T	Homo	INTERGENIC
SBS	Chr11	11951358	T-C	Homo	INTERGENIC
SBS	Chr11	20695737	T-C	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	1751419	1751425	6
Deletion	Chr12	3225700	3225701	1
Deletion	Chr2	11805001	11990000	184999	12
Deletion	Chr7	11896083	11896086	3
Deletion	Chr7	17300212	17300215	3
Deletion	Chr9	19134966	19134969	3
Deletion	Chr2	19903001	19987000	83999	5
Deletion	Chr2	21244016	21244020	4
Deletion	Chr2	22074356	22074360	4
Deletion	Chr4	25580415	25580438	23
Deletion	Chr2	26645001	26691000	45999	6
Deletion	Chr6	30852335	30852336	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	11807317	12467595
Inversion	Chr2	12466461	12467596

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes