Search Kitaake

Mutant Information

Mutant Name	FN1324-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1324-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr2 21598897 A-G Homo INTRON
SBS Chr2 31394388 G-T Hetero INTERGENIC
SBS Chr2 33128245 G-A Hetero INTERGENIC
SBS Chr3 18919724 G-A Hetero INTERGENIC
SBS Chr3 28018247 C-A Hetero INTERGENIC
SBS Chr3 28018249 C-A Hetero INTERGENIC
SBS Chr4 1518083 C-T Hetero INTERGENIC
SBS Chr4 4126986 A-T Hetero INTERGENIC
SBS Chr4 25356869 C-T Hetero INTERGENIC
SBS Chr5 3713543 A-T Homo INTERGENIC
SBS Chr5 9032813 C-T Homo INTERGENIC
SBS Chr5 11000526 C-G Homo INTERGENIC
SBS Chr5 16835869 T-A Homo INTERGENIC
SBS Chr5 16835870 C-A Homo INTERGENIC
SBS Chr6 14542692 C-T Homo INTERGENIC
SBS Chr6 23563906 G-A Homo INTERGENIC
SBS Chr6 25900003 C-T Homo INTERGENIC
SBS Chr7 14253055 C-T Hetero INTRON
SBS Chr7 28444477 G-T Hetero INTRON
SBS Chr7 28444478 G-A Hetero INTRON
SBS Chr8 15153355 G-A Hetero INTERGENIC
SBS Chr9 11120816 A-T Hetero INTERGENIC
SBS Chr9 13056695 G-A Homo INTERGENIC
SBS Chr10 8516447 T-G Hetero INTRON
SBS Chr10 20363462 C-T Hetero INTERGENIC
SBS Chr10 21182543 T-G Hetero INTRON
SBS Chr11 12787823 C-A Homo INTERGENIC
SBS Chr11 29554067 T-G Hetero INTERGENIC
SBS Chr12 19690165 G-A Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2744768 2744769 1
Deletion Chr2 3510001 3561000 50999 8
Deletion Chr2 6991170 6991171 1
Deletion Chr2 7213001 7229000 15999 4
Deletion Chr2 7233001 7289000 55999 8
Deletion Chr9 7487092 7487099 7
Deletion Chr9 8587245 8587251 6 OsKitaake09g050800
Deletion Chr6 10244447 10244448 1 OsKitaake06g116700
Deletion Chr2 10341370 10341373 3
Deletion Chr9 11658458 11658463 5
Deletion Chr4 12544625 12544643 18
Deletion Chr6 12704406 12704423 17
Deletion Chr6 13947760 13947761 1
Deletion Chr5 15149474 15149476 2
Deletion Chr6 15156048 15156049 1
Deletion Chr6 16479831 16479836 5
Deletion Chr11 20550615 20550629 14
Deletion Chr12 21414011 21414019 8
Deletion Chr1 22071590 22071597 7
Deletion Chr4 25601966 25601967 1
Deletion Chr6 27396378 27396393 15
Deletion Chr5 29287059 29287061 2
Deletion Chr2 30086983 30086985 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8637000 8637003 2
Insertion Chr1 29178420 29178423 2
Insertion Chr2 33527434 33527437 2
Insertion Chr3 35554031 35554034 2
Insertion Chr8 21668366 21668369 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 4445369 5099919 2
Inversion Chr5 4445375 5099929 2
Inversion Chr2 7010151 7213309 OsKitaake02g096600
Inversion Chr2 7011141 7291947
Inversion Chr6 11914617 12892868

Translocations: 7

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8437113 Chr6 11914614
Translocation Chr8 18984379 Chr4 35849405 OsKitaake04g307200
Translocation Chr8 18986206 Chr4 35849407 OsKitaake04g307200
Translocation Chr9 21418279 Chr2 7011124
Translocation Chr9 21418292 Chr2 7010152
Translocation Chr11 29546695 Chr2 4680415 OsKitaake02g064600
Translocation Chr11 29546697 Chr2 4677124

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr2	21598897	A-G	Homo	INTRON
SBS	Chr2	31394388	G-T	Hetero	INTERGENIC
SBS	Chr2	33128245	G-A	Hetero	INTERGENIC
SBS	Chr3	18919724	G-A	Hetero	INTERGENIC
SBS	Chr3	28018247	C-A	Hetero	INTERGENIC
SBS	Chr3	28018249	C-A	Hetero	INTERGENIC
SBS	Chr4	1518083	C-T	Hetero	INTERGENIC
SBS	Chr4	4126986	A-T	Hetero	INTERGENIC
SBS	Chr4	25356869	C-T	Hetero	INTERGENIC
SBS	Chr5	3713543	A-T	Homo	INTERGENIC
SBS	Chr5	9032813	C-T	Homo	INTERGENIC
SBS	Chr5	11000526	C-G	Homo	INTERGENIC
SBS	Chr5	16835869	T-A	Homo	INTERGENIC
SBS	Chr5	16835870	C-A	Homo	INTERGENIC
SBS	Chr6	14542692	C-T	Homo	INTERGENIC
SBS	Chr6	23563906	G-A	Homo	INTERGENIC
SBS	Chr6	25900003	C-T	Homo	INTERGENIC
SBS	Chr7	14253055	C-T	Hetero	INTRON
SBS	Chr7	28444477	G-T	Hetero	INTRON
SBS	Chr7	28444478	G-A	Hetero	INTRON
SBS	Chr8	15153355	G-A	Hetero	INTERGENIC
SBS	Chr9	11120816	A-T	Hetero	INTERGENIC
SBS	Chr9	13056695	G-A	Homo	INTERGENIC
SBS	Chr10	8516447	T-G	Hetero	INTRON
SBS	Chr10	20363462	C-T	Hetero	INTERGENIC
SBS	Chr10	21182543	T-G	Hetero	INTRON
SBS	Chr11	12787823	C-A	Homo	INTERGENIC
SBS	Chr11	29554067	T-G	Hetero	INTERGENIC
SBS	Chr12	19690165	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2744768	2744769	1
Deletion	Chr2	3510001	3561000	50999	8
Deletion	Chr2	6991170	6991171	1
Deletion	Chr2	7213001	7229000	15999	4
Deletion	Chr2	7233001	7289000	55999	8
Deletion	Chr9	7487092	7487099	7
Deletion	Chr9	8587245	8587251	6	OsKitaake09g050800
Deletion	Chr6	10244447	10244448	1	OsKitaake06g116700
Deletion	Chr2	10341370	10341373	3
Deletion	Chr9	11658458	11658463	5
Deletion	Chr4	12544625	12544643	18
Deletion	Chr6	12704406	12704423	17
Deletion	Chr6	13947760	13947761	1
Deletion	Chr5	15149474	15149476	2
Deletion	Chr6	15156048	15156049	1
Deletion	Chr6	16479831	16479836	5
Deletion	Chr11	20550615	20550629	14
Deletion	Chr12	21414011	21414019	8
Deletion	Chr1	22071590	22071597	7
Deletion	Chr4	25601966	25601967	1
Deletion	Chr6	27396378	27396393	15
Deletion	Chr5	29287059	29287061	2
Deletion	Chr2	30086983	30086985	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	4445369	5099919	2
Inversion	Chr5	4445375	5099929	2
Inversion	Chr2	7010151	7213309	OsKitaake02g096600
Inversion	Chr2	7011141	7291947
Inversion	Chr6	11914617	12892868

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes