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Mutant Information

Mutant Name	FN1326-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1326-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 18374859 C-T Hetero INTERGENIC
SBS Chr1 22732093 A-G Hetero INTERGENIC
SBS Chr1 27106591 T-C Hetero INTRON
SBS Chr1 28500503 C-T Hetero INTERGENIC
SBS Chr2 3963089 C-A Hetero INTERGENIC
SBS Chr2 8097529 T-C Hetero INTRON
SBS Chr2 22436572 T-C Hetero INTRON
SBS Chr2 22869511 C-G Hetero INTERGENIC
SBS Chr2 24477709 G-A Hetero INTERGENIC
SBS Chr2 31230975 C-T Homo INTERGENIC
SBS Chr3 17312938 C-T Homo INTERGENIC
SBS Chr3 23039765 C-T Homo INTERGENIC
SBS Chr3 34091517 T-A Hetero INTERGENIC
SBS Chr4 10207713 T-C Homo INTERGENIC
SBS Chr4 11175287 A-T Hetero INTERGENIC
SBS Chr4 17188271 C-T Hetero INTERGENIC
SBS Chr4 19926849 C-A Hetero INTERGENIC
SBS Chr5 26632362 C-G Hetero INTERGENIC
SBS Chr6 18455863 T-C Hetero INTERGENIC
SBS Chr6 19771316 G-T Hetero INTRON
SBS Chr7 8316640 C-T Homo INTERGENIC
SBS Chr7 11343280 C-T Hetero INTERGENIC
SBS Chr7 15488119 A-C Homo INTERGENIC
SBS Chr7 23972006 T-G Homo UTR_5_PRIME
SBS Chr7 25002096 C-A Homo INTERGENIC
SBS Chr8 3463905 G-A Homo UTR_3_PRIME
SBS Chr8 11866097 C-A Homo INTERGENIC
SBS Chr8 12373084 G-A Homo INTERGENIC
SBS Chr10 18261418 G-T Homo INTERGENIC
SBS Chr10 21854602 C-A Homo UTR_3_PRIME
SBS Chr11 15735039 G-A Hetero INTERGENIC
SBS Chr11 15750562 G-A Hetero INTERGENIC
SBS Chr11 28755346 T-C Homo INTERGENIC
SBS Chr12 18861357 G-T Hetero INTERGENIC
SBS Chr12 21779264 T-G Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 8642372 8642375 3
Deletion Chr1 15441001 15480000 38999 9
Deletion Chr11 16306001 16344000 37999 3
Deletion Chr7 23610100 23610102 2
Deletion Chr3 24930303 24930304 1
Deletion Chr4 29986391 29986402 11
Deletion Chr3 32406001 32415000 8999 OsKitaake03g343200
Deletion Chr3 32421001 32498000 76999 10
Deletion Chr3 33909496 33909503 7
Deletion Chr2 35358695 35358705 10
Deletion Chr1 36269523 36269530 7
Deletion Chr1 38734287 38734289 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 34919097 34919100 2
Insertion Chr2 8493493 8493496 2
Insertion Chr2 26097417 26097420 2
Insertion Chr6 11887823 11887826 2
Insertion Chr12 4727790 4727793 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 16041213 16918893
Inversion Chr11 16247357 16340150

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 1840433 Chr3 34225101 OsKitaake12g028000
Translocation Chr12 1849426 Chr3 34225102 OsKitaake12g028400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18374859	C-T	Hetero	INTERGENIC
SBS	Chr1	22732093	A-G	Hetero	INTERGENIC
SBS	Chr1	27106591	T-C	Hetero	INTRON
SBS	Chr1	28500503	C-T	Hetero	INTERGENIC
SBS	Chr2	3963089	C-A	Hetero	INTERGENIC
SBS	Chr2	8097529	T-C	Hetero	INTRON
SBS	Chr2	22436572	T-C	Hetero	INTRON
SBS	Chr2	22869511	C-G	Hetero	INTERGENIC
SBS	Chr2	24477709	G-A	Hetero	INTERGENIC
SBS	Chr2	31230975	C-T	Homo	INTERGENIC
SBS	Chr3	17312938	C-T	Homo	INTERGENIC
SBS	Chr3	23039765	C-T	Homo	INTERGENIC
SBS	Chr3	34091517	T-A	Hetero	INTERGENIC
SBS	Chr4	10207713	T-C	Homo	INTERGENIC
SBS	Chr4	11175287	A-T	Hetero	INTERGENIC
SBS	Chr4	17188271	C-T	Hetero	INTERGENIC
SBS	Chr4	19926849	C-A	Hetero	INTERGENIC
SBS	Chr5	26632362	C-G	Hetero	INTERGENIC
SBS	Chr6	18455863	T-C	Hetero	INTERGENIC
SBS	Chr6	19771316	G-T	Hetero	INTRON
SBS	Chr7	8316640	C-T	Homo	INTERGENIC
SBS	Chr7	11343280	C-T	Hetero	INTERGENIC
SBS	Chr7	15488119	A-C	Homo	INTERGENIC
SBS	Chr7	23972006	T-G	Homo	UTR_5_PRIME
SBS	Chr7	25002096	C-A	Homo	INTERGENIC
SBS	Chr8	3463905	G-A	Homo	UTR_3_PRIME
SBS	Chr8	11866097	C-A	Homo	INTERGENIC
SBS	Chr8	12373084	G-A	Homo	INTERGENIC
SBS	Chr10	18261418	G-T	Homo	INTERGENIC
SBS	Chr10	21854602	C-A	Homo	UTR_3_PRIME
SBS	Chr11	15735039	G-A	Hetero	INTERGENIC
SBS	Chr11	15750562	G-A	Hetero	INTERGENIC
SBS	Chr11	28755346	T-C	Homo	INTERGENIC
SBS	Chr12	18861357	G-T	Hetero	INTERGENIC
SBS	Chr12	21779264	T-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	8642372	8642375	3
Deletion	Chr1	15441001	15480000	38999	9
Deletion	Chr11	16306001	16344000	37999	3
Deletion	Chr7	23610100	23610102	2
Deletion	Chr3	24930303	24930304	1
Deletion	Chr4	29986391	29986402	11
Deletion	Chr3	32406001	32415000	8999	OsKitaake03g343200
Deletion	Chr3	32421001	32498000	76999	10
Deletion	Chr3	33909496	33909503	7
Deletion	Chr2	35358695	35358705	10
Deletion	Chr1	36269523	36269530	7
Deletion	Chr1	38734287	38734289	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	16041213	16918893
Inversion	Chr11	16247357	16340150

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes