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| Mutant Information |
|---|
| Mutant Name | FN1329-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1329-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 21
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 4689627 | G-A | Homo | INTRON | |
| SBS | Chr1 | 12756937 | A-C | Homo | INTERGENIC | |
| SBS | Chr1 | 36763733 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 7944630 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 2782634 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 10374581 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 16759862 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 27240284 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 8443817 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 25363447 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 32385377 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 1618948 | T-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 5939760 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 18548221 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 11492442 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 16359170 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 23902169 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 9177050 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 12096199 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 21780825 | T-A | Hetero | INTRON | |
| SBS | Chr11 | 20812873 | T-C | Hetero | START_GAINED |
Deletions: 21
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 94467 | 94476 | 9 | OsKitaake02g001500 |
| Deletion | Chr10 | 304694 | 304698 | 4 | |
| Deletion | Chr10 | 719319 | 719328 | 9 | |
| Deletion | Chr1 | 6958582 | 6958585 | 3 | |
| Deletion | Chr1 | 7296249 | 7296252 | 3 | |
| Deletion | Chr1 | 7318001 | 7323000 | 4999 | OsKitaake01g091900 |
| Deletion | Chr11 | 10014261 | 10014263 | 2 | |
| Deletion | Chr4 | 14706001 | 14745000 | 38999 | OsKitaake04g070000 |
| Deletion | Chr10 | 15320615 | 15320625 | 10 | |
| Deletion | Chr2 | 17998165 | 17998168 | 3 | |
| Deletion | Chr7 | 18223489 | 18223496 | 7 | |
| Deletion | Chr7 | 22328433 | 22328440 | 7 | OsKitaake07g188900 |
| Deletion | Chr12 | 23329988 | 23329991 | 3 | |
| Deletion | Chr2 | 25388837 | 25388848 | 11 | OsKitaake02g250000 |
| Deletion | Chr8 | 25603684 | 25603688 | 4 | |
| Deletion | Chr7 | 29576001 | 29597000 | 20999 | OsKitaake07g285300 |
| Deletion | Chr3 | 31415581 | 31415584 | 3 | OsKitaake03g331400 |
| Deletion | Chr2 | 34273344 | 34273349 | 5 | |
| Deletion | Chr3 | 34627343 | 34627344 | 1 | |
| Deletion | Chr2 | 34649742 | 34649745 | 3 | |
| Deletion | Chr1 | 42062363 | 42062364 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 15020501 | 15020505 | 3 | |
| Insertion | Chr10 | 319908 | 319911 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 22020857 | 22170085 | OsKitaake03g241635 |
| Inversion | Chr3 | 22020919 | 22042673 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 16492886 | Chr4 | 14702638 | |
| Translocation | Chr6 | 16492896 | Chr4 | 14702491 |