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| Mutant Information |
|---|
| Mutant Name | FN1334-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1334-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 30
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 8654007 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 40811932 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 15042805 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 28512115 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 9776400 | T-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 23791540 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 29138032 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 32551256 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 991595 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 991596 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 1034305 | G-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake05g012500 |
| SBS | Chr5 | 9225573 | T-A | Homo | INTERGENIC | |
| SBS | Chr5 | 30208763 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 19571722 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 23416832 | G-C | Hetero | INTRON | |
| SBS | Chr6 | 29624651 | T-G | Hetero | INTRON | |
| SBS | Chr6 | 30055645 | T-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 2365555 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 26050526 | C-A | Homo | INTERGENIC | |
| SBS | Chr7 | 26508799 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 7356687 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 20277365 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 22280723 | A-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 2398452 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 13365237 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 15825234 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 3210490 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 20170841 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 23111541 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 6107539 | C-T | Hetero | SYNONYMOUS_CODING |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 2469535 | 2469620 | 85 | |
| Deletion | Chr8 | 4831893 | 4831895 | 2 | |
| Deletion | Chr11 | 6586001 | 6637000 | 50999 | 6 |
| Deletion | Chr6 | 8324418 | 8324420 | 2 | |
| Deletion | Chr3 | 10436244 | 10436246 | 2 | |
| Deletion | Chr12 | 10864111 | 10864112 | 1 | |
| Deletion | Chr7 | 10985972 | 10985973 | 1 | |
| Deletion | Chr12 | 11618700 | 11618702 | 2 | |
| Deletion | Chr1 | 13187001 | 13201000 | 13999 | OsKitaake01g155600 |
| Deletion | Chr9 | 15167092 | 15167093 | 1 | |
| Deletion | Chr8 | 17264253 | 17264339 | 86 | |
| Deletion | Chr10 | 18846672 | 18846678 | 6 | |
| Deletion | Chr11 | 28992001 | 29253000 | 260999 | 24 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 10740525 | 10740528 | 2 | |
| Insertion | Chr8 | 11655385 | 11655388 | 2 | |
| Insertion | Chr11 | 20034084 | 20034088 | 3 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 6118657 | 6118854 | |
| Inversion | Chr11 | 6562238 | 6586202 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 17810883 | Chr7 | 8562867 | OsKitaake10g123300 |
| Translocation | Chr10 | 17812232 | Chr7 | 8562865 | |
| Translocation | Chr12 | 19661775 | Chr11 | 6636633 | OsKitaake11g078800 |
| Translocation | Chr9 | 20802845 | Chr6 | 29968187 | OsKitaake06g280900 |