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Mutant Information

Mutant Name	FN1336-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1336-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 32358470 T-C Hetero INTERGENIC
SBS Chr1 41112254 C-A Hetero STOP_GAINED OsKitaake01g448800
SBS Chr2 137952 G-T Hetero START_GAINED
SBS Chr2 4905428 T-A Hetero INTERGENIC
SBS Chr2 11466412 C-T Hetero INTERGENIC
SBS Chr2 15310037 G-T Hetero INTERGENIC
SBS Chr2 26882234 T-C Homo INTERGENIC
SBS Chr2 32069242 C-T Homo INTERGENIC
SBS Chr3 24244207 C-T Homo INTERGENIC
SBS Chr3 31557173 A-T Homo NON_SYNONYMOUS_CODING OsKitaake03g332400
SBS Chr3 34506622 C-T Homo INTERGENIC
SBS Chr3 34506623 C-T Homo INTERGENIC
SBS Chr3 34506626 G-A Homo INTERGENIC
SBS Chr3 34507400 G-T Homo INTERGENIC
SBS Chr3 36704739 G-A Hetero INTERGENIC
SBS Chr5 19523 G-A Homo INTERGENIC
SBS Chr5 3464504 A-T Hetero INTERGENIC
SBS Chr5 4847504 C-A Homo NON_SYNONYMOUS_CODING OsKitaake05g054200
SBS Chr5 7511866 T-A Hetero INTERGENIC
SBS Chr5 24844685 G-C Homo INTERGENIC
SBS Chr6 1314673 G-A Hetero INTERGENIC
SBS Chr6 8073502 C-T Homo INTERGENIC
SBS Chr6 22188735 G-A Homo UTR_5_PRIME
SBS Chr6 28002850 A-T Hetero INTERGENIC
SBS Chr7 9221102 C-T Homo INTRON
SBS Chr7 21624269 A-G Hetero INTERGENIC
SBS Chr7 24097638 A-C Hetero INTERGENIC
SBS Chr8 14787451 C-A Hetero UTR_5_PRIME
SBS Chr8 20431144 T-A Hetero INTERGENIC
SBS Chr9 2502697 C-A Hetero INTERGENIC
SBS Chr9 5740788 T-G Hetero INTERGENIC
SBS Chr9 9832579 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g059600
SBS Chr9 9961404 T-C Hetero INTERGENIC
SBS Chr9 12742569 G-A Homo INTERGENIC
SBS Chr9 19770617 C-A Homo INTERGENIC
SBS Chr10 15305826 A-T Hetero INTERGENIC
SBS Chr11 10890432 T-C Homo INTERGENIC
SBS Chr12 6142933 A-T Hetero INTERGENIC
SBS Chr12 19740695 C-T Hetero INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 1540107 1540108 1
Deletion Chr7 2884683 2884688 5 OsKitaake07g036700
Deletion Chr5 4508679 4508688 9
Deletion Chr5 4828394 4828395 1
Deletion Chr11 6167510 6167511 1
Deletion Chr5 6233059 6233060 1
Deletion Chr12 7630001 7925000 294999 15
Deletion Chr7 10808163 10808169 6
Deletion Chr12 11817590 11817592 2
Deletion Chr2 13817172 13817367 195
Deletion Chr2 18118390 18118395 5
Deletion Chr8 18123612 18123613 1
Deletion Chr6 18687503 18687509 6
Deletion Chr1 19303390 19303393 3
Deletion Chr7 22432001 22448000 15999 2
Deletion Chr8 24120885 24120886 1
Deletion Chr4 24731001 24861000 129999 24
Deletion Chr4 24893001 24930000 36999 2
Deletion Chr3 28099506 28099518 12
Deletion Chr3 30686613 30686626 13
Deletion Chr2 31053005 31053011 6
Deletion Chr4 31326802 31326803 1 OsKitaake04g245400
Deletion Chr1 31482133 31482211 78 OsKitaake01g316000
Deletion Chr1 38820218 38820221 3

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 16382976 16382979 2
Insertion Chr4 2405314 2405317 2
Insertion Chr8 17352396 17352399 2
Insertion Chr10 21334827 21334830 2
Insertion Chr7 9047214 9047219 4

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 25009588 25242683

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32358470	T-C	Hetero	INTERGENIC
SBS	Chr1	41112254	C-A	Hetero	STOP_GAINED	OsKitaake01g448800
SBS	Chr2	137952	G-T	Hetero	START_GAINED
SBS	Chr2	4905428	T-A	Hetero	INTERGENIC
SBS	Chr2	11466412	C-T	Hetero	INTERGENIC
SBS	Chr2	15310037	G-T	Hetero	INTERGENIC
SBS	Chr2	26882234	T-C	Homo	INTERGENIC
SBS	Chr2	32069242	C-T	Homo	INTERGENIC
SBS	Chr3	24244207	C-T	Homo	INTERGENIC
SBS	Chr3	31557173	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g332400
SBS	Chr3	34506622	C-T	Homo	INTERGENIC
SBS	Chr3	34506623	C-T	Homo	INTERGENIC
SBS	Chr3	34506626	G-A	Homo	INTERGENIC
SBS	Chr3	34507400	G-T	Homo	INTERGENIC
SBS	Chr3	36704739	G-A	Hetero	INTERGENIC
SBS	Chr5	19523	G-A	Homo	INTERGENIC
SBS	Chr5	3464504	A-T	Hetero	INTERGENIC
SBS	Chr5	4847504	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake05g054200
SBS	Chr5	7511866	T-A	Hetero	INTERGENIC
SBS	Chr5	24844685	G-C	Homo	INTERGENIC
SBS	Chr6	1314673	G-A	Hetero	INTERGENIC
SBS	Chr6	8073502	C-T	Homo	INTERGENIC
SBS	Chr6	22188735	G-A	Homo	UTR_5_PRIME
SBS	Chr6	28002850	A-T	Hetero	INTERGENIC
SBS	Chr7	9221102	C-T	Homo	INTRON
SBS	Chr7	21624269	A-G	Hetero	INTERGENIC
SBS	Chr7	24097638	A-C	Hetero	INTERGENIC
SBS	Chr8	14787451	C-A	Hetero	UTR_5_PRIME
SBS	Chr8	20431144	T-A	Hetero	INTERGENIC
SBS	Chr9	2502697	C-A	Hetero	INTERGENIC
SBS	Chr9	5740788	T-G	Hetero	INTERGENIC
SBS	Chr9	9832579	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g059600
SBS	Chr9	9961404	T-C	Hetero	INTERGENIC
SBS	Chr9	12742569	G-A	Homo	INTERGENIC
SBS	Chr9	19770617	C-A	Homo	INTERGENIC
SBS	Chr10	15305826	A-T	Hetero	INTERGENIC
SBS	Chr11	10890432	T-C	Homo	INTERGENIC
SBS	Chr12	6142933	A-T	Hetero	INTERGENIC
SBS	Chr12	19740695	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	1540107	1540108	1
Deletion	Chr7	2884683	2884688	5	OsKitaake07g036700
Deletion	Chr5	4508679	4508688	9
Deletion	Chr5	4828394	4828395	1
Deletion	Chr11	6167510	6167511	1
Deletion	Chr5	6233059	6233060	1
Deletion	Chr12	7630001	7925000	294999	15
Deletion	Chr7	10808163	10808169	6
Deletion	Chr12	11817590	11817592	2
Deletion	Chr2	13817172	13817367	195
Deletion	Chr2	18118390	18118395	5
Deletion	Chr8	18123612	18123613	1
Deletion	Chr6	18687503	18687509	6
Deletion	Chr1	19303390	19303393	3
Deletion	Chr7	22432001	22448000	15999	2
Deletion	Chr8	24120885	24120886	1
Deletion	Chr4	24731001	24861000	129999	24
Deletion	Chr4	24893001	24930000	36999	2
Deletion	Chr3	28099506	28099518	12
Deletion	Chr3	30686613	30686626	13
Deletion	Chr2	31053005	31053011	6
Deletion	Chr4	31326802	31326803	1	OsKitaake04g245400
Deletion	Chr1	31482133	31482211	78	OsKitaake01g316000
Deletion	Chr1	38820218	38820221	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	25009588	25242683

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes