Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN1338-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1338-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 36
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14385721 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 14385722 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 19755728 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 35102767 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 33994056 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 37140397 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 8344356 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 23739998 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 26651473 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 27597650 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 32101934 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 32177086 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g341000 |
| SBS | Chr5 | 17948384 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 24426919 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 29899843 | A-T | Hetero | INTRON | |
| SBS | Chr6 | 10832031 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 12373199 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 5922878 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 291266 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 3858965 | C-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 5399641 | G-T | Homo | INTRON | |
| SBS | Chr9 | 13578461 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 14459657 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 20573214 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g174100 |
| SBS | Chr11 | 3662103 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 6796526 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 11796137 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 17959985 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 23083672 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 23862830 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 24337151 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 935523 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 9860332 | G-T | Homo | INTERGENIC | |
| SBS | Chr12 | 15940511 | C-G | Homo | INTERGENIC | |
| SBS | Chr12 | 18117841 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 21607570 | G-A | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 9639001 | 9656000 | 16999 | OsKitaake11g100100 |
| Deletion | Chr11 | 10206001 | 10530000 | 323999 | 14 |
| Deletion | Chr11 | 10536001 | 10550000 | 13999 | |
| Deletion | Chr6 | 10608767 | 10608782 | 15 | |
| Deletion | Chr9 | 13157283 | 13157291 | 8 | |
| Deletion | Chr1 | 17528442 | 17528444 | 2 | |
| Deletion | Chr1 | 19800725 | 19800726 | 1 | |
| Deletion | Chr6 | 22628508 | 22628509 | 1 | |
| Deletion | Chr1 | 25133776 | 25133777 | 1 | OsKitaake01g243300 |
| Deletion | Chr3 | 31265212 | 31265214 | 2 | |
| Deletion | Chr4 | 36463062 | 36463065 | 3 | |
| Deletion | Chr1 | 37790596 | 37790603 | 7 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 3416835 | 3416838 | 2 | |
| Insertion | Chr4 | 31804582 | 31804585 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 32276728 | 32721419 | |
| Inversion | Chr3 | 32276738 | 32721422 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 7975675 | Chr8 | 27494613 | OsKitaake11g088000 |
| Translocation | Chr11 | 9639368 | Chr8 | 27494270 | |
| Translocation | Chr6 | 26249878 | Chr5 | 23590002 | |
| Translocation | Chr6 | 26249888 | Chr5 | 23588677 |