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Mutant Information

Mutant Name	FN1348-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1348-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 40

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7594814 T-G Hetero INTERGENIC
SBS Chr1 20292033 A-C Hetero UTR_3_PRIME
SBS Chr1 20441760 T-G Hetero INTERGENIC
SBS Chr2 13010762 T-A Homo INTERGENIC
SBS Chr2 20598392 G-A Hetero INTERGENIC
SBS Chr2 21511674 C-G Hetero INTERGENIC
SBS Chr2 22399222 A-C Hetero INTERGENIC
SBS Chr2 24498819 T-A Homo INTERGENIC
SBS Chr2 34256573 A-T Hetero INTERGENIC
SBS Chr3 6416393 C-G Hetero INTERGENIC
SBS Chr3 6577872 G-A Hetero START_GAINED
SBS Chr3 7437663 C-T Hetero INTERGENIC
SBS Chr3 11610158 A-T Hetero INTERGENIC
SBS Chr3 14792239 C-T Hetero INTRON
SBS Chr3 19472626 G-A Hetero INTERGENIC
SBS Chr3 34844797 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g380100
SBS Chr4 14908611 G-A Homo INTERGENIC
SBS Chr4 28726237 G-T Homo INTERGENIC
SBS Chr4 31895450 C-G Hetero INTERGENIC
SBS Chr5 2219375 A-G Homo UTR_3_PRIME
SBS Chr5 12993190 A-G Hetero INTERGENIC
SBS Chr5 16234117 G-T Hetero INTERGENIC
SBS Chr5 20916175 C-T Hetero INTERGENIC
SBS Chr6 21031444 C-T Hetero INTERGENIC
SBS Chr6 24000990 G-A Hetero INTRON
SBS Chr7 8332882 G-A Hetero INTERGENIC
SBS Chr7 8741030 A-T Hetero INTERGENIC
SBS Chr7 9748664 G-T Hetero INTERGENIC
SBS Chr7 9992066 C-T Hetero INTERGENIC
SBS Chr7 24537981 T-A Hetero UTR_3_PRIME
SBS Chr7 24537982 T-A Hetero UTR_3_PRIME
SBS Chr7 29442329 C-T Hetero UTR_5_PRIME
SBS Chr8 8581098 G-A Hetero INTERGENIC
SBS Chr8 8932281 T-A Hetero INTERGENIC
SBS Chr9 21742626 C-T Hetero INTERGENIC
SBS Chr11 328817 C-T Hetero INTERGENIC
SBS Chr11 21095637 T-A Homo INTERGENIC
SBS Chr11 25888482 C-G Hetero INTERGENIC
SBS Chr11 28807604 A-T Hetero INTERGENIC
SBS Chr12 18813178 T-C Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1252455 1252456 1
Deletion Chr7 1392959 1392961 2
Deletion Chr12 2998344 2998353 9
Deletion Chr11 3637737 3637747 10
Deletion Chr7 5412789 5412790 1
Deletion Chr2 6154858 6154859 1
Deletion Chr12 7698915 7698916 1
Deletion Chr1 8660438 8660440 2
Deletion Chr10 13809220 13809229 9
Deletion Chr1 15537573 15537583 10
Deletion Chr12 17695992 17695993 1 OsKitaake12g130400
Deletion Chr2 18402626 18402628 2
Deletion Chr1 19403391 19403392 1
Deletion Chr1 24697281 24697282 1
Deletion Chr8 27373937 27373939 2
Deletion Chr1 28443393 28443412 19
Deletion Chr7 29265418 29265530 112
Deletion Chr1 31506932 31506945 13
Deletion Chr1 34967443 34967447 4

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 16596672 16596675 2
Insertion Chr8 20306069 20306072 2
Insertion Chr2 35354679 35354681 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 24428471 24713650 OsKitaake07g217800
Inversion Chr7 24428477 24713653 OsKitaake07g217800

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 6449860 Chr7 24650579
Translocation Chr9 13774665 Chr4 11516891 OsKitaake09g092900
Translocation Chr9 13774668 Chr4 11516487 OsKitaake09g092900
Translocation Chr4 36706489 Chr3 25785210 OsKitaake04g319700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7594814	T-G	Hetero	INTERGENIC
SBS	Chr1	20292033	A-C	Hetero	UTR_3_PRIME
SBS	Chr1	20441760	T-G	Hetero	INTERGENIC
SBS	Chr2	13010762	T-A	Homo	INTERGENIC
SBS	Chr2	20598392	G-A	Hetero	INTERGENIC
SBS	Chr2	21511674	C-G	Hetero	INTERGENIC
SBS	Chr2	22399222	A-C	Hetero	INTERGENIC
SBS	Chr2	24498819	T-A	Homo	INTERGENIC
SBS	Chr2	34256573	A-T	Hetero	INTERGENIC
SBS	Chr3	6416393	C-G	Hetero	INTERGENIC
SBS	Chr3	6577872	G-A	Hetero	START_GAINED
SBS	Chr3	7437663	C-T	Hetero	INTERGENIC
SBS	Chr3	11610158	A-T	Hetero	INTERGENIC
SBS	Chr3	14792239	C-T	Hetero	INTRON
SBS	Chr3	19472626	G-A	Hetero	INTERGENIC
SBS	Chr3	34844797	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g380100
SBS	Chr4	14908611	G-A	Homo	INTERGENIC
SBS	Chr4	28726237	G-T	Homo	INTERGENIC
SBS	Chr4	31895450	C-G	Hetero	INTERGENIC
SBS	Chr5	2219375	A-G	Homo	UTR_3_PRIME
SBS	Chr5	12993190	A-G	Hetero	INTERGENIC
SBS	Chr5	16234117	G-T	Hetero	INTERGENIC
SBS	Chr5	20916175	C-T	Hetero	INTERGENIC
SBS	Chr6	21031444	C-T	Hetero	INTERGENIC
SBS	Chr6	24000990	G-A	Hetero	INTRON
SBS	Chr7	8332882	G-A	Hetero	INTERGENIC
SBS	Chr7	8741030	A-T	Hetero	INTERGENIC
SBS	Chr7	9748664	G-T	Hetero	INTERGENIC
SBS	Chr7	9992066	C-T	Hetero	INTERGENIC
SBS	Chr7	24537981	T-A	Hetero	UTR_3_PRIME
SBS	Chr7	24537982	T-A	Hetero	UTR_3_PRIME
SBS	Chr7	29442329	C-T	Hetero	UTR_5_PRIME
SBS	Chr8	8581098	G-A	Hetero	INTERGENIC
SBS	Chr8	8932281	T-A	Hetero	INTERGENIC
SBS	Chr9	21742626	C-T	Hetero	INTERGENIC
SBS	Chr11	328817	C-T	Hetero	INTERGENIC
SBS	Chr11	21095637	T-A	Homo	INTERGENIC
SBS	Chr11	25888482	C-G	Hetero	INTERGENIC
SBS	Chr11	28807604	A-T	Hetero	INTERGENIC
SBS	Chr12	18813178	T-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1252455	1252456	1
Deletion	Chr7	1392959	1392961	2
Deletion	Chr12	2998344	2998353	9
Deletion	Chr11	3637737	3637747	10
Deletion	Chr7	5412789	5412790	1
Deletion	Chr2	6154858	6154859	1
Deletion	Chr12	7698915	7698916	1
Deletion	Chr1	8660438	8660440	2
Deletion	Chr10	13809220	13809229	9
Deletion	Chr1	15537573	15537583	10
Deletion	Chr12	17695992	17695993	1	OsKitaake12g130400
Deletion	Chr2	18402626	18402628	2
Deletion	Chr1	19403391	19403392	1
Deletion	Chr1	24697281	24697282	1
Deletion	Chr8	27373937	27373939	2
Deletion	Chr1	28443393	28443412	19
Deletion	Chr7	29265418	29265530	112
Deletion	Chr1	31506932	31506945	13
Deletion	Chr1	34967443	34967447	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	24428471	24713650	OsKitaake07g217800
Inversion	Chr7	24428477	24713653	OsKitaake07g217800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes