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Mutant Information

Mutant Name	FN1349-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1349-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16467002 T-A Hetero INTRON
SBS Chr1 28285060 G-T Hetero SYNONYMOUS_CODING
SBS Chr2 6822266 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g093000
SBS Chr2 14450412 T-C Homo INTERGENIC
SBS Chr2 23367924 C-T Homo INTRON
SBS Chr2 29168569 C-T Hetero INTERGENIC
SBS Chr2 34185763 C-A Hetero INTERGENIC
SBS Chr3 777625 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g012200
SBS Chr3 4999076 G-A Hetero INTERGENIC
SBS Chr3 6040268 A-G Hetero INTRON
SBS Chr3 20485578 A-T Homo INTERGENIC
SBS Chr3 26785391 C-A Homo INTERGENIC
SBS Chr3 26785392 C-A Homo INTERGENIC
SBS Chr3 32606698 C-T Hetero INTERGENIC
SBS Chr3 32606705 T-G Hetero INTERGENIC
SBS Chr3 34677931 A-T Hetero STOP_GAINED OsKitaake03g377400
SBS Chr4 12619106 G-T Hetero INTERGENIC
SBS Chr4 14360183 T-G Homo INTERGENIC
SBS Chr4 15671077 C-G Homo INTERGENIC
SBS Chr4 18667668 C-A Homo INTERGENIC
SBS Chr5 4274010 G-A Hetero INTERGENIC
SBS Chr5 4353340 A-G Hetero INTERGENIC
SBS Chr5 22312877 T-A Hetero INTERGENIC
SBS Chr5 27492201 T-C Hetero INTERGENIC
SBS Chr6 9404034 A-G Hetero INTERGENIC
SBS Chr6 22155781 T-A Homo INTERGENIC
SBS Chr7 8735983 T-A Homo INTERGENIC
SBS Chr8 1775193 G-A Hetero INTRON
SBS Chr9 4167416 C-T Homo INTERGENIC
SBS Chr9 10743340 A-G Hetero INTERGENIC
SBS Chr9 17252020 C-A Homo INTRON
SBS Chr10 3269279 G-A Hetero INTERGENIC
SBS Chr10 7443221 C-A Homo INTERGENIC
SBS Chr10 15457882 G-A Hetero INTERGENIC
SBS Chr10 18870699 C-T Hetero INTERGENIC
SBS Chr11 26379726 C-T Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 488288 488289 1
Deletion Chr12 4906776 4906783 7
Deletion Chr12 6293447 6293448 1
Deletion Chr12 9898001 10308000 409999 17
Deletion Chr12 10311001 10672000 360999 26
Deletion Chr6 10470419 10470420 1 OsKitaake06g117900
Deletion Chr12 10685001 10709000 23999
Deletion Chr9 12297545 12297548 3
Deletion Chr8 16251688 16251689 1
Deletion Chr3 17665913 17665915 2 OsKitaake03g217200
Deletion Chr6 19535443 19535446 3
Deletion Chr1 20494962 20494963 1
Deletion Chr3 20516716 20516735 19
Deletion Chr12 20581193 20581206 13
Deletion Chr8 21446682 21446695 13
Deletion Chr6 22147405 22147418 13
Deletion Chr1 26590890 26590893 3
Deletion Chr6 28683344 28683346 2
Deletion Chr3 36371796 36371798 2

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 21765199 21765202 2
Insertion Chr2 36784098 36784102 3

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 12982820 Chr6 22901004
Translocation Chr11 12982826 Chr6 22905400
Translocation Chr11 20326950 Chr6 1462926
Translocation Chr11 20329046 Chr6 1462921

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16467002	T-A	Hetero	INTRON
SBS	Chr1	28285060	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr2	6822266	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g093000
SBS	Chr2	14450412	T-C	Homo	INTERGENIC
SBS	Chr2	23367924	C-T	Homo	INTRON
SBS	Chr2	29168569	C-T	Hetero	INTERGENIC
SBS	Chr2	34185763	C-A	Hetero	INTERGENIC
SBS	Chr3	777625	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g012200
SBS	Chr3	4999076	G-A	Hetero	INTERGENIC
SBS	Chr3	6040268	A-G	Hetero	INTRON
SBS	Chr3	20485578	A-T	Homo	INTERGENIC
SBS	Chr3	26785391	C-A	Homo	INTERGENIC
SBS	Chr3	26785392	C-A	Homo	INTERGENIC
SBS	Chr3	32606698	C-T	Hetero	INTERGENIC
SBS	Chr3	32606705	T-G	Hetero	INTERGENIC
SBS	Chr3	34677931	A-T	Hetero	STOP_GAINED	OsKitaake03g377400
SBS	Chr4	12619106	G-T	Hetero	INTERGENIC
SBS	Chr4	14360183	T-G	Homo	INTERGENIC
SBS	Chr4	15671077	C-G	Homo	INTERGENIC
SBS	Chr4	18667668	C-A	Homo	INTERGENIC
SBS	Chr5	4274010	G-A	Hetero	INTERGENIC
SBS	Chr5	4353340	A-G	Hetero	INTERGENIC
SBS	Chr5	22312877	T-A	Hetero	INTERGENIC
SBS	Chr5	27492201	T-C	Hetero	INTERGENIC
SBS	Chr6	9404034	A-G	Hetero	INTERGENIC
SBS	Chr6	22155781	T-A	Homo	INTERGENIC
SBS	Chr7	8735983	T-A	Homo	INTERGENIC
SBS	Chr8	1775193	G-A	Hetero	INTRON
SBS	Chr9	4167416	C-T	Homo	INTERGENIC
SBS	Chr9	10743340	A-G	Hetero	INTERGENIC
SBS	Chr9	17252020	C-A	Homo	INTRON
SBS	Chr10	3269279	G-A	Hetero	INTERGENIC
SBS	Chr10	7443221	C-A	Homo	INTERGENIC
SBS	Chr10	15457882	G-A	Hetero	INTERGENIC
SBS	Chr10	18870699	C-T	Hetero	INTERGENIC
SBS	Chr11	26379726	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	488288	488289	1
Deletion	Chr12	4906776	4906783	7
Deletion	Chr12	6293447	6293448	1
Deletion	Chr12	9898001	10308000	409999	17
Deletion	Chr12	10311001	10672000	360999	26
Deletion	Chr6	10470419	10470420	1	OsKitaake06g117900
Deletion	Chr12	10685001	10709000	23999
Deletion	Chr9	12297545	12297548	3
Deletion	Chr8	16251688	16251689	1
Deletion	Chr3	17665913	17665915	2	OsKitaake03g217200
Deletion	Chr6	19535443	19535446	3
Deletion	Chr1	20494962	20494963	1
Deletion	Chr3	20516716	20516735	19
Deletion	Chr12	20581193	20581206	13
Deletion	Chr8	21446682	21446695	13
Deletion	Chr6	22147405	22147418	13
Deletion	Chr1	26590890	26590893	3
Deletion	Chr6	28683344	28683346	2
Deletion	Chr3	36371796	36371798	2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	12982820	Chr6	22901004
Translocation	Chr11	12982826	Chr6	22905400
Translocation	Chr11	20326950	Chr6	1462926
Translocation	Chr11	20329046	Chr6	1462921

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes