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Mutant Information

Mutant Name	FN1350-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1350-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 19

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 10656166 T-C Hetero INTERGENIC
SBS Chr2 4886348 G-A Hetero INTRON
SBS Chr2 5094219 C-A Hetero INTERGENIC
SBS Chr2 29997897 T-A Hetero INTERGENIC
SBS Chr2 32541102 G-A Homo INTERGENIC
SBS Chr3 10789052 C-T Homo INTRON
SBS Chr3 15702223 C-T Homo INTERGENIC
SBS Chr3 26469017 G-A Homo INTERGENIC
SBS Chr3 26469021 T-A Homo INTERGENIC
SBS Chr4 16198647 G-C Hetero INTRON
SBS Chr5 27025750 A-G Homo INTRON
SBS Chr7 18615292 C-T Homo INTERGENIC
SBS Chr7 24325797 A-T Hetero INTERGENIC
SBS Chr9 244364 C-T Hetero INTERGENIC
SBS Chr10 8369769 G-T Hetero INTERGENIC
SBS Chr10 14249162 C-T Hetero INTRON
SBS Chr11 5631055 G-A Homo NON_SYNONYMOUS_CODING OsKitaake11g069000
SBS Chr11 20542842 C-T Hetero INTRON
SBS Chr12 13821942 T-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 3163717 3163735 18
Deletion Chr6 5352474 5352480 6
Deletion Chr12 7771011 7771012 1
Deletion Chr5 12888518 12888520 2
Deletion Chr10 14567507 14567508 1
Deletion Chr10 15270001 15339000 68999 7
Deletion Chr1 15770835 15770840 5
Deletion Chr5 18535410 18535424 14
Deletion Chr3 28281088 28281097 9
Deletion Chr3 36883880 36883882 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 15771735 15771737 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10656166	T-C	Hetero	INTERGENIC
SBS	Chr2	4886348	G-A	Hetero	INTRON
SBS	Chr2	5094219	C-A	Hetero	INTERGENIC
SBS	Chr2	29997897	T-A	Hetero	INTERGENIC
SBS	Chr2	32541102	G-A	Homo	INTERGENIC
SBS	Chr3	10789052	C-T	Homo	INTRON
SBS	Chr3	15702223	C-T	Homo	INTERGENIC
SBS	Chr3	26469017	G-A	Homo	INTERGENIC
SBS	Chr3	26469021	T-A	Homo	INTERGENIC
SBS	Chr4	16198647	G-C	Hetero	INTRON
SBS	Chr5	27025750	A-G	Homo	INTRON
SBS	Chr7	18615292	C-T	Homo	INTERGENIC
SBS	Chr7	24325797	A-T	Hetero	INTERGENIC
SBS	Chr9	244364	C-T	Hetero	INTERGENIC
SBS	Chr10	8369769	G-T	Hetero	INTERGENIC
SBS	Chr10	14249162	C-T	Hetero	INTRON
SBS	Chr11	5631055	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake11g069000
SBS	Chr11	20542842	C-T	Hetero	INTRON
SBS	Chr12	13821942	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	3163717	3163735	18
Deletion	Chr6	5352474	5352480	6
Deletion	Chr12	7771011	7771012	1
Deletion	Chr5	12888518	12888520	2
Deletion	Chr10	14567507	14567508	1
Deletion	Chr10	15270001	15339000	68999	7
Deletion	Chr1	15770835	15770840	5
Deletion	Chr5	18535410	18535424	14
Deletion	Chr3	28281088	28281097	9
Deletion	Chr3	36883880	36883882	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes