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Mutant Information

Mutant Name	FN1355-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1355-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 51

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 344537 C-T Hetero INTERGENIC
SBS Chr1 14369180 A-G Hetero INTERGENIC
SBS Chr1 27906463 C-T Hetero INTERGENIC
SBS Chr2 11754890 A-T Hetero INTERGENIC
SBS Chr2 30374698 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake02g309400
SBS Chr2 30374699 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 7919786 T-G Hetero INTERGENIC
SBS Chr3 32568672 G-A Hetero INTERGENIC
SBS Chr3 35693058 G-A Homo INTERGENIC
SBS Chr4 762214 T-C Hetero INTERGENIC
SBS Chr4 3195267 C-A Hetero INTERGENIC
SBS Chr4 4211886 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 7948135 A-C Hetero INTRON
SBS Chr4 16986351 G-A Hetero INTERGENIC
SBS Chr4 22035996 A-T Hetero INTERGENIC
SBS Chr4 22133906 G-A Hetero INTERGENIC
SBS Chr4 23660190 C-T Hetero INTERGENIC
SBS Chr4 33403281 G-A Homo INTERGENIC
SBS Chr5 4513935 A-G Hetero INTERGENIC
SBS Chr5 8501838 T-A Hetero INTERGENIC
SBS Chr5 8501839 C-T Hetero INTERGENIC
SBS Chr5 20144393 G-A Hetero INTRON
SBS Chr5 20339224 G-T Hetero INTERGENIC
SBS Chr5 22467998 T-C Hetero INTERGENIC
SBS Chr5 28647476 C-T Homo INTERGENIC
SBS Chr6 9801650 A-C Hetero INTRON
SBS Chr6 9829998 G-A Hetero INTERGENIC
SBS Chr6 11293523 G-A Hetero INTERGENIC
SBS Chr6 11642205 T-A Hetero INTERGENIC
SBS Chr6 12925039 C-T Hetero INTERGENIC
SBS Chr6 18067073 T-A Hetero INTERGENIC
SBS Chr6 28340644 C-G Homo INTERGENIC
SBS Chr6 29165576 G-A Hetero INTRON
SBS Chr7 3222011 T-A Homo INTRON
SBS Chr7 8349770 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g090850
SBS Chr7 11769895 G-A Hetero INTERGENIC
SBS Chr7 14191545 G-A Hetero INTERGENIC
SBS Chr7 14554046 C-A Hetero INTERGENIC
SBS Chr8 8432874 T-A Hetero INTERGENIC
SBS Chr8 19433569 A-G Homo INTERGENIC
SBS Chr9 374315 C-T Hetero INTERGENIC
SBS Chr9 7796051 C-T Hetero INTERGENIC
SBS Chr9 10314752 C-T Hetero INTERGENIC
SBS Chr9 10314753 C-T Hetero INTERGENIC
SBS Chr9 13484492 C-G Homo INTERGENIC
SBS Chr10 1281559 G-A Hetero INTERGENIC
SBS Chr10 18458784 A-T Homo INTERGENIC
SBS Chr11 23753634 G-C Hetero UTR_3_PRIME
SBS Chr11 23753638 G-A Hetero UTR_3_PRIME
SBS Chr11 23809322 T-C Hetero INTERGENIC
SBS Chr12 7628097 C-T Hetero INTERGENIC

Deletions: 20

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 3194001 3209000 14999
Deletion Chr8 3369385 3369396 11
Deletion Chr8 4162709 4162716 7
Deletion Chr4 7423047 7423053 6
Deletion Chr3 8846371 8846383 12 OsKitaake03g121000
Deletion Chr1 10259973 10259978 5
Deletion Chr3 10747220 10747222 2
Deletion Chr3 11807626 11807627 1
Deletion Chr6 16336339 16336349 10
Deletion Chr10 16433282 16433291 9
Deletion Chr2 19306376 19306379 3
Deletion Chr1 23963553 23963557 4
Deletion Chr2 23973973 23973980 7
Deletion Chr7 26091602 26091604 2
Deletion Chr1 26977688 26977690 2
Deletion Chr11 27004305 27004309 4
Deletion Chr7 27222408 27222415 7
Deletion Chr5 29157759 29157779 20
Deletion Chr1 37154001 37183000 28999 3
Deletion Chr1 43479602 43479606 4

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 7280492 7280495 2
Insertion Chr9 10160983 10160987 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 23722978 23777116 2
Inversion Chr11 23722993 23777122 2

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 2795887 Chr3 26886301

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	344537	C-T	Hetero	INTERGENIC
SBS	Chr1	14369180	A-G	Hetero	INTERGENIC
SBS	Chr1	27906463	C-T	Hetero	INTERGENIC
SBS	Chr2	11754890	A-T	Hetero	INTERGENIC
SBS	Chr2	30374698	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g309400
SBS	Chr2	30374699	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	7919786	T-G	Hetero	INTERGENIC
SBS	Chr3	32568672	G-A	Hetero	INTERGENIC
SBS	Chr3	35693058	G-A	Homo	INTERGENIC
SBS	Chr4	762214	T-C	Hetero	INTERGENIC
SBS	Chr4	3195267	C-A	Hetero	INTERGENIC
SBS	Chr4	4211886	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	7948135	A-C	Hetero	INTRON
SBS	Chr4	16986351	G-A	Hetero	INTERGENIC
SBS	Chr4	22035996	A-T	Hetero	INTERGENIC
SBS	Chr4	22133906	G-A	Hetero	INTERGENIC
SBS	Chr4	23660190	C-T	Hetero	INTERGENIC
SBS	Chr4	33403281	G-A	Homo	INTERGENIC
SBS	Chr5	4513935	A-G	Hetero	INTERGENIC
SBS	Chr5	8501838	T-A	Hetero	INTERGENIC
SBS	Chr5	8501839	C-T	Hetero	INTERGENIC
SBS	Chr5	20144393	G-A	Hetero	INTRON
SBS	Chr5	20339224	G-T	Hetero	INTERGENIC
SBS	Chr5	22467998	T-C	Hetero	INTERGENIC
SBS	Chr5	28647476	C-T	Homo	INTERGENIC
SBS	Chr6	9801650	A-C	Hetero	INTRON
SBS	Chr6	9829998	G-A	Hetero	INTERGENIC
SBS	Chr6	11293523	G-A	Hetero	INTERGENIC
SBS	Chr6	11642205	T-A	Hetero	INTERGENIC
SBS	Chr6	12925039	C-T	Hetero	INTERGENIC
SBS	Chr6	18067073	T-A	Hetero	INTERGENIC
SBS	Chr6	28340644	C-G	Homo	INTERGENIC
SBS	Chr6	29165576	G-A	Hetero	INTRON
SBS	Chr7	3222011	T-A	Homo	INTRON
SBS	Chr7	8349770	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g090850
SBS	Chr7	11769895	G-A	Hetero	INTERGENIC
SBS	Chr7	14191545	G-A	Hetero	INTERGENIC
SBS	Chr7	14554046	C-A	Hetero	INTERGENIC
SBS	Chr8	8432874	T-A	Hetero	INTERGENIC
SBS	Chr8	19433569	A-G	Homo	INTERGENIC
SBS	Chr9	374315	C-T	Hetero	INTERGENIC
SBS	Chr9	7796051	C-T	Hetero	INTERGENIC
SBS	Chr9	10314752	C-T	Hetero	INTERGENIC
SBS	Chr9	10314753	C-T	Hetero	INTERGENIC
SBS	Chr9	13484492	C-G	Homo	INTERGENIC
SBS	Chr10	1281559	G-A	Hetero	INTERGENIC
SBS	Chr10	18458784	A-T	Homo	INTERGENIC
SBS	Chr11	23753634	G-C	Hetero	UTR_3_PRIME
SBS	Chr11	23753638	G-A	Hetero	UTR_3_PRIME
SBS	Chr11	23809322	T-C	Hetero	INTERGENIC
SBS	Chr12	7628097	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	3194001	3209000	14999
Deletion	Chr8	3369385	3369396	11
Deletion	Chr8	4162709	4162716	7
Deletion	Chr4	7423047	7423053	6
Deletion	Chr3	8846371	8846383	12	OsKitaake03g121000
Deletion	Chr1	10259973	10259978	5
Deletion	Chr3	10747220	10747222	2
Deletion	Chr3	11807626	11807627	1
Deletion	Chr6	16336339	16336349	10
Deletion	Chr10	16433282	16433291	9
Deletion	Chr2	19306376	19306379	3
Deletion	Chr1	23963553	23963557	4
Deletion	Chr2	23973973	23973980	7
Deletion	Chr7	26091602	26091604	2
Deletion	Chr1	26977688	26977690	2
Deletion	Chr11	27004305	27004309	4
Deletion	Chr7	27222408	27222415	7
Deletion	Chr5	29157759	29157779	20
Deletion	Chr1	37154001	37183000	28999	3
Deletion	Chr1	43479602	43479606	4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	23722978	23777116	2
Inversion	Chr11	23722993	23777122	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes