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Mutant Information

Mutant Name	FN1356-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1356-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6186823 C-T Hetero INTERGENIC
SBS Chr1 21396581 C-T Homo INTERGENIC
SBS Chr1 34797579 A-G Hetero INTERGENIC
SBS Chr2 9465413 A-G Hetero INTERGENIC
SBS Chr2 14162199 G-A Hetero INTERGENIC
SBS Chr2 17635689 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 21324402 A-T Hetero INTRON
SBS Chr2 35788732 A-T Hetero INTERGENIC
SBS Chr3 6660515 G-A Hetero INTERGENIC
SBS Chr3 23902801 A-G Hetero INTERGENIC
SBS Chr4 22532254 T-A Hetero INTRON
SBS Chr5 4464055 A-T Hetero INTRON
SBS Chr5 8361158 T-A Hetero INTERGENIC
SBS Chr5 16292797 G-T Hetero INTERGENIC
SBS Chr5 26013564 G-A Hetero INTERGENIC
SBS Chr6 8718339 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g106400
SBS Chr6 25101965 C-T Hetero INTERGENIC
SBS Chr6 30195302 G-A Hetero INTERGENIC
SBS Chr7 17345965 T-C Homo INTERGENIC
SBS Chr8 3935964 A-C Hetero INTERGENIC
SBS Chr8 13125451 T-G Hetero INTRON
SBS Chr8 21916710 G-A Hetero INTRON
SBS Chr9 6448449 A-T Hetero INTERGENIC
SBS Chr10 942755 T-C Hetero INTERGENIC
SBS Chr10 3692997 T-C Hetero INTERGENIC
SBS Chr10 12941568 G-A Hetero INTERGENIC
SBS Chr11 1414747 G-A Hetero INTERGENIC
SBS Chr11 9254963 G-C Hetero INTERGENIC
SBS Chr11 9805060 G-T Hetero INTERGENIC
SBS Chr11 11500772 T-G Homo INTERGENIC
SBS Chr11 16699520 C-T Hetero INTERGENIC
SBS Chr11 25846631 G-A Hetero INTERGENIC
SBS Chr11 28453789 G-C Hetero INTERGENIC
SBS Chr12 969470 G-A Homo NON_SYNONYMOUS_CODING OsKitaake12g014100
SBS Chr12 1418550 G-A Hetero INTERGENIC
SBS Chr12 6029504 G-A Hetero INTERGENIC
SBS Chr12 9533720 G-A Homo INTERGENIC
SBS Chr12 16206667 A-T Hetero INTERGENIC
SBS Chr12 25489460 T-A Hetero UTR_5_PRIME

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2881871 2881879 8
Deletion Chr11 8868291 8868292 1
Deletion Chr7 9346362 9346364 2
Deletion Chr5 10119467 10119468 1 OsKitaake05g089901
Deletion Chr1 11735798 11735800 2
Deletion Chr7 15084001 15278000 193999 18
Deletion Chr2 18332282 18332285 3
Deletion Chr2 21230130 21230131 1
Deletion Chr9 22256993 22256999 6
Deletion Chr1 22879821 22879828 7
Deletion Chr11 23454488 23454489 1
Deletion Chr7 23717561 23717563 2
Deletion Chr6 25861271 25861272 1
Deletion Chr1 29820075 29820077 2
Deletion Chr4 33660321 33660323 2
Deletion Chr4 35426001 35840000 413999 79

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 29461455 29461460 4
Insertion Chr11 28897088 28897091 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 16490279 16938833 OsKitaake08g128800
Inversion Chr8 16490283 16938832 OsKitaake08g128800

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8627703 Chr5 15033389
Translocation Chr9 19911954 Chr8 14627340 2
Translocation Chr9 19913073 Chr5 8120953 OsKitaake09g165800

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6186823	C-T	Hetero	INTERGENIC
SBS	Chr1	21396581	C-T	Homo	INTERGENIC
SBS	Chr1	34797579	A-G	Hetero	INTERGENIC
SBS	Chr2	9465413	A-G	Hetero	INTERGENIC
SBS	Chr2	14162199	G-A	Hetero	INTERGENIC
SBS	Chr2	17635689	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	21324402	A-T	Hetero	INTRON
SBS	Chr2	35788732	A-T	Hetero	INTERGENIC
SBS	Chr3	6660515	G-A	Hetero	INTERGENIC
SBS	Chr3	23902801	A-G	Hetero	INTERGENIC
SBS	Chr4	22532254	T-A	Hetero	INTRON
SBS	Chr5	4464055	A-T	Hetero	INTRON
SBS	Chr5	8361158	T-A	Hetero	INTERGENIC
SBS	Chr5	16292797	G-T	Hetero	INTERGENIC
SBS	Chr5	26013564	G-A	Hetero	INTERGENIC
SBS	Chr6	8718339	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g106400
SBS	Chr6	25101965	C-T	Hetero	INTERGENIC
SBS	Chr6	30195302	G-A	Hetero	INTERGENIC
SBS	Chr7	17345965	T-C	Homo	INTERGENIC
SBS	Chr8	3935964	A-C	Hetero	INTERGENIC
SBS	Chr8	13125451	T-G	Hetero	INTRON
SBS	Chr8	21916710	G-A	Hetero	INTRON
SBS	Chr9	6448449	A-T	Hetero	INTERGENIC
SBS	Chr10	942755	T-C	Hetero	INTERGENIC
SBS	Chr10	3692997	T-C	Hetero	INTERGENIC
SBS	Chr10	12941568	G-A	Hetero	INTERGENIC
SBS	Chr11	1414747	G-A	Hetero	INTERGENIC
SBS	Chr11	9254963	G-C	Hetero	INTERGENIC
SBS	Chr11	9805060	G-T	Hetero	INTERGENIC
SBS	Chr11	11500772	T-G	Homo	INTERGENIC
SBS	Chr11	16699520	C-T	Hetero	INTERGENIC
SBS	Chr11	25846631	G-A	Hetero	INTERGENIC
SBS	Chr11	28453789	G-C	Hetero	INTERGENIC
SBS	Chr12	969470	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g014100
SBS	Chr12	1418550	G-A	Hetero	INTERGENIC
SBS	Chr12	6029504	G-A	Hetero	INTERGENIC
SBS	Chr12	9533720	G-A	Homo	INTERGENIC
SBS	Chr12	16206667	A-T	Hetero	INTERGENIC
SBS	Chr12	25489460	T-A	Hetero	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2881871	2881879	8
Deletion	Chr11	8868291	8868292	1
Deletion	Chr7	9346362	9346364	2
Deletion	Chr5	10119467	10119468	1	OsKitaake05g089901
Deletion	Chr1	11735798	11735800	2
Deletion	Chr7	15084001	15278000	193999	18
Deletion	Chr2	18332282	18332285	3
Deletion	Chr2	21230130	21230131	1
Deletion	Chr9	22256993	22256999	6
Deletion	Chr1	22879821	22879828	7
Deletion	Chr11	23454488	23454489	1
Deletion	Chr7	23717561	23717563	2
Deletion	Chr6	25861271	25861272	1
Deletion	Chr1	29820075	29820077	2
Deletion	Chr4	33660321	33660323	2
Deletion	Chr4	35426001	35840000	413999	79

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	16490279	16938833	OsKitaake08g128800
Inversion	Chr8	16490283	16938832	OsKitaake08g128800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes