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Mutant Information

Mutant Name	FN1367-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1367-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 17

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11217422 T-A Homo INTERGENIC
SBS Chr2 24881801 G-A Hetero INTERGENIC
SBS Chr3 28848318 C-G Hetero INTERGENIC
SBS Chr4 8816057 C-T Hetero INTERGENIC
SBS Chr5 1738198 C-T Hetero INTRON
SBS Chr5 8318097 T-A Hetero INTERGENIC
SBS Chr5 14379855 G-A Hetero INTERGENIC
SBS Chr5 18669039 T-C Hetero INTERGENIC
SBS Chr8 6704309 C-A Hetero INTERGENIC
SBS Chr9 5079126 G-T Hetero INTERGENIC
SBS Chr9 6551735 A-T Hetero INTERGENIC
SBS Chr10 23348956 G-T Hetero INTERGENIC
SBS Chr11 3266687 T-C Homo INTERGENIC
SBS Chr11 12290773 C-A Homo INTERGENIC
SBS Chr11 22165633 C-A Homo INTERGENIC
SBS Chr11 26046153 C-T Homo UTR_3_PRIME
SBS Chr12 21660601 C-T Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1 332000 331999 52
Deletion Chr6 8016583 8016585 2
Deletion Chr4 9480408 9480580 172
Deletion Chr11 9727615 9727629 14
Deletion Chr10 11224451 11224452 1
Deletion Chr8 12963588 12963590 2
Deletion Chr10 13128501 13128509 8
Deletion Chr11 26950001 27002000 51999 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 32725079 32725082 2
Insertion Chr7 17731886 17731889 2
Insertion Chr9 12436907 12436910 2

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 12219849 12596356
Inversion Chr11 26805795 26950701
Inversion Chr11 26997288 27242784
Inversion Chr1 35681489 36514640 OsKitaake01g377700
Inversion Chr1 35681493 36514635 OsKitaake01g377700

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 328725 Chr7 24639128
Translocation Chr11 7403166 Chr2 14842264
Translocation Chr11 7403364 Chr2 14842272

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11217422	T-A	Homo	INTERGENIC
SBS	Chr2	24881801	G-A	Hetero	INTERGENIC
SBS	Chr3	28848318	C-G	Hetero	INTERGENIC
SBS	Chr4	8816057	C-T	Hetero	INTERGENIC
SBS	Chr5	1738198	C-T	Hetero	INTRON
SBS	Chr5	8318097	T-A	Hetero	INTERGENIC
SBS	Chr5	14379855	G-A	Hetero	INTERGENIC
SBS	Chr5	18669039	T-C	Hetero	INTERGENIC
SBS	Chr8	6704309	C-A	Hetero	INTERGENIC
SBS	Chr9	5079126	G-T	Hetero	INTERGENIC
SBS	Chr9	6551735	A-T	Hetero	INTERGENIC
SBS	Chr10	23348956	G-T	Hetero	INTERGENIC
SBS	Chr11	3266687	T-C	Homo	INTERGENIC
SBS	Chr11	12290773	C-A	Homo	INTERGENIC
SBS	Chr11	22165633	C-A	Homo	INTERGENIC
SBS	Chr11	26046153	C-T	Homo	UTR_3_PRIME
SBS	Chr12	21660601	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1	332000	331999	52
Deletion	Chr6	8016583	8016585	2
Deletion	Chr4	9480408	9480580	172
Deletion	Chr11	9727615	9727629	14
Deletion	Chr10	11224451	11224452	1
Deletion	Chr8	12963588	12963590	2
Deletion	Chr10	13128501	13128509	8
Deletion	Chr11	26950001	27002000	51999	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	12219849	12596356
Inversion	Chr11	26805795	26950701
Inversion	Chr11	26997288	27242784
Inversion	Chr1	35681489	36514640	OsKitaake01g377700
Inversion	Chr1	35681493	36514635	OsKitaake01g377700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes