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Mutant Information

Mutant Name	FN1376-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1376-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7120877	A-G	Hetero	INTERGENIC
SBS	Chr1	12283134	G-A	Homo	INTERGENIC
SBS	Chr1	29608951	G-A	Homo	INTERGENIC
SBS	Chr2	22532746	A-G	Hetero	INTERGENIC
SBS	Chr2	24717932	G-T	Hetero	INTRON
SBS	Chr2	27779560	T-A	Hetero	INTERGENIC
SBS	Chr3	13423519	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g179400
SBS	Chr3	18507305	C-T	Hetero	INTERGENIC
SBS	Chr3	31991354	A-T	Homo	INTERGENIC
SBS	Chr4	2604265	C-T	Homo	INTERGENIC
SBS	Chr4	4746306	G-A	Hetero	INTERGENIC
SBS	Chr4	17846312	G-T	Hetero	INTERGENIC
SBS	Chr5	22940026	C-A	Homo	INTERGENIC
SBS	Chr6	8572036	C-G	Hetero	INTERGENIC
SBS	Chr6	17902319	G-T	Homo	INTERGENIC
SBS	Chr7	14442886	G-T	Hetero	INTERGENIC
SBS	Chr7	25829050	C-T	Homo	INTERGENIC
SBS	Chr8	5240105	A-G	Hetero	INTERGENIC
SBS	Chr8	27105540	G-T	Hetero	INTERGENIC
SBS	Chr10	15406624	C-T	Hetero	UTR_3_PRIME
SBS	Chr11	12032768	A-G	Hetero	INTERGENIC
SBS	Chr12	11264378	G-A	Homo	INTERGENIC
SBS	Chr12	14030739	C-T	Homo	INTERGENIC
SBS	Chr12	16680096	C-T	Homo	INTERGENIC

Deletions: 9

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	82182	82184	2
Deletion	Chr3	7098001	7157000	58999	8
Deletion	Chr12	9876659	9876805	146
Deletion	Chr11	11433001	12029000	595999	35
Deletion	Chr11	14510127	14510498	371
Deletion	Chr8	23378612	23378613	1
Deletion	Chr3	27948455	27948457	2	OsKitaake03g289200
Deletion	Chr6	28579127	28579128	1
Deletion	Chr2	35356115	35356125	10

Insertions: 4

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr2	6795167	6795170	2
Insertion	Chr6	24012680	24012683	2
Insertion	Chr1	17285794	17285798	3
Insertion	Chr2	25139969	25139971	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	7040034	7102410	OsKitaake03g098500
Inversion	Chr3	7040040	7161001	2
Inversion	Chr4	35667570	36131844	2
Inversion	Chr4	35667586	36131856	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	373035	Chr11	214194
Translocation	Chr8	12939385	Chr1	915206