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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN1392-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1392-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 31457927 G-A Homo INTERGENIC
SBS Chr2 16113272 A-G Homo INTRON
SBS Chr2 16245281 G-A Homo UTR_3_PRIME
SBS Chr2 28640745 A-G Hetero INTERGENIC
SBS Chr3 23970341 G-A Hetero INTERGENIC
SBS Chr4 7444842 G-A Homo INTERGENIC
SBS Chr4 10187241 T-C Hetero INTERGENIC
SBS Chr5 9286346 C-T Homo INTERGENIC
SBS Chr5 14093673 A-G Homo INTERGENIC
SBS Chr5 24942887 G-A Homo INTERGENIC
SBS Chr5 30166877 T-A Homo INTERGENIC
SBS Chr6 10891915 G-A Hetero INTERGENIC
SBS Chr6 24937250 G-C Homo INTERGENIC
SBS Chr6 27821248 C-A Homo INTERGENIC
SBS Chr6 29514701 T-C Hetero INTRON
SBS Chr6 30606456 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g288400
SBS Chr6 30700156 T-A Hetero UTR_3_PRIME
SBS Chr7 12849894 A-G Homo INTERGENIC
SBS Chr7 12881323 C-A Homo INTERGENIC
SBS Chr7 14495349 G-A Hetero INTERGENIC
SBS Chr8 1288317 C-A Homo INTERGENIC
SBS Chr8 10471610 C-A Hetero INTERGENIC
SBS Chr8 13833486 T-C Hetero INTERGENIC
SBS Chr8 17541470 C-A Hetero INTERGENIC
SBS Chr9 4001072 C-T Hetero INTERGENIC
SBS Chr9 15005712 G-A Hetero INTERGENIC
SBS Chr10 9868409 C-T Homo INTERGENIC
SBS Chr10 21750225 C-T Hetero INTERGENIC
SBS Chr11 9599286 C-T Homo INTERGENIC
SBS Chr11 11575961 C-A Homo INTRON
SBS Chr11 16365214 G-A Hetero INTERGENIC
SBS Chr12 15584617 G-C Homo INTERGENIC
SBS Chr12 21597896 T-C Homo INTRON
SBS Chr12 24991964 C-T Homo INTERGENIC
SBS Chr12 25596571 G-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 618898 618902 4
Deletion Chr11 2200219 2200220 1
Deletion Chr12 3793592 3793593 1
Deletion Chr12 8327979 8327981 2
Deletion Chr7 9229001 9280000 50999 4
Deletion Chr5 9606673 9606674 1
Deletion Chr5 9654232 9654243 11
Deletion Chr7 12854971 12854980 9
Deletion Chr2 14549952 14549960 8
Deletion Chr7 15709241 15709250 9
Deletion Chr2 19926393 19926402 9
Deletion Chr7 20919001 20932000 12999
Deletion Chr5 22200846 22200848 2
Deletion Chr7 26763214 26763222 8
Deletion Chr2 29915322 29915323 1

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 4040901 4040904 2
Insertion Chr2 14073970 14073973 2
Insertion Chr3 6215702 6215706 3
Insertion Chr4 15074681 15074684 2
Insertion Chr11 7828448 7828452 3
Insertion Chr3 4089967 4089969 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 12855767 12888180
Inversion Chr7 12886021 12888187

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	31457927	G-A	Homo	INTERGENIC
SBS	Chr2	16113272	A-G	Homo	INTRON
SBS	Chr2	16245281	G-A	Homo	UTR_3_PRIME
SBS	Chr2	28640745	A-G	Hetero	INTERGENIC
SBS	Chr3	23970341	G-A	Hetero	INTERGENIC
SBS	Chr4	7444842	G-A	Homo	INTERGENIC
SBS	Chr4	10187241	T-C	Hetero	INTERGENIC
SBS	Chr5	9286346	C-T	Homo	INTERGENIC
SBS	Chr5	14093673	A-G	Homo	INTERGENIC
SBS	Chr5	24942887	G-A	Homo	INTERGENIC
SBS	Chr5	30166877	T-A	Homo	INTERGENIC
SBS	Chr6	10891915	G-A	Hetero	INTERGENIC
SBS	Chr6	24937250	G-C	Homo	INTERGENIC
SBS	Chr6	27821248	C-A	Homo	INTERGENIC
SBS	Chr6	29514701	T-C	Hetero	INTRON
SBS	Chr6	30606456	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g288400
SBS	Chr6	30700156	T-A	Hetero	UTR_3_PRIME
SBS	Chr7	12849894	A-G	Homo	INTERGENIC
SBS	Chr7	12881323	C-A	Homo	INTERGENIC
SBS	Chr7	14495349	G-A	Hetero	INTERGENIC
SBS	Chr8	1288317	C-A	Homo	INTERGENIC
SBS	Chr8	10471610	C-A	Hetero	INTERGENIC
SBS	Chr8	13833486	T-C	Hetero	INTERGENIC
SBS	Chr8	17541470	C-A	Hetero	INTERGENIC
SBS	Chr9	4001072	C-T	Hetero	INTERGENIC
SBS	Chr9	15005712	G-A	Hetero	INTERGENIC
SBS	Chr10	9868409	C-T	Homo	INTERGENIC
SBS	Chr10	21750225	C-T	Hetero	INTERGENIC
SBS	Chr11	9599286	C-T	Homo	INTERGENIC
SBS	Chr11	11575961	C-A	Homo	INTRON
SBS	Chr11	16365214	G-A	Hetero	INTERGENIC
SBS	Chr12	15584617	G-C	Homo	INTERGENIC
SBS	Chr12	21597896	T-C	Homo	INTRON
SBS	Chr12	24991964	C-T	Homo	INTERGENIC
SBS	Chr12	25596571	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	618898	618902	4
Deletion	Chr11	2200219	2200220	1
Deletion	Chr12	3793592	3793593	1
Deletion	Chr12	8327979	8327981	2
Deletion	Chr7	9229001	9280000	50999	4
Deletion	Chr5	9606673	9606674	1
Deletion	Chr5	9654232	9654243	11
Deletion	Chr7	12854971	12854980	9
Deletion	Chr2	14549952	14549960	8
Deletion	Chr7	15709241	15709250	9
Deletion	Chr2	19926393	19926402	9
Deletion	Chr7	20919001	20932000	12999
Deletion	Chr5	22200846	22200848	2
Deletion	Chr7	26763214	26763222	8
Deletion	Chr2	29915322	29915323	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	12855767	12888180
Inversion	Chr7	12886021	12888187

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes