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Mutant Information

Mutant Name	FN1395-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1395-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 18

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3324584 T-C Hetero UTR_5_PRIME
SBS Chr2 11287886 T-A Hetero INTERGENIC
SBS Chr3 6629235 A-G Hetero INTERGENIC
SBS Chr3 15389095 T-A Hetero INTERGENIC
SBS Chr3 26622089 C-T Hetero INTERGENIC
SBS Chr5 14584071 A-C Homo INTERGENIC
SBS Chr5 16138369 T-A Hetero INTERGENIC
SBS Chr7 11899153 C-A Hetero INTERGENIC
SBS Chr9 2368994 G-A Hetero INTERGENIC
SBS Chr9 2368995 G-A Hetero INTERGENIC
SBS Chr9 7392203 C-T Hetero INTRON
SBS Chr9 10061576 T-C Hetero INTRON
SBS Chr9 16302195 T-A Hetero INTERGENIC
SBS Chr10 5704576 G-A Homo INTERGENIC
SBS Chr10 18178501 T-C Hetero UTR_3_PRIME
SBS Chr11 5930359 C-T Hetero INTRON
SBS Chr12 6746632 A-G Hetero INTERGENIC
SBS Chr12 22703824 C-T Hetero UTR_3_PRIME

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 21148 21149 1
Deletion Chr7 4131597 4131598 1
Deletion Chr2 10266413 10266415 2
Deletion Chr9 13405267 13405268 1
Deletion Chr7 15388990 15388991 1
Deletion Chr8 19358809 19358810 1
Deletion Chr5 20581574 20581575 1
Deletion Chr1 23369214 23369215 1
Deletion Chr4 25930493 25930586 93
Deletion Chr1 34830821 34830822 1
Deletion Chr1 39974001 39982000 7999

Insertions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 4036415 4036418 2
Insertion Chr6 10856 10859 2
Insertion Chr6 24954 24957 2
Insertion Chr6 98647 98649 1
Insertion Chr7 11994714 11994716 1
Insertion Chr7 11995366 11995368 1
Insertion Chr10 8681609 8681611 1
Insertion Chr12 11417913 11417915 1
Insertion Chr12 16545651 16545655 3

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3324584	T-C	Hetero	UTR_5_PRIME
SBS	Chr2	11287886	T-A	Hetero	INTERGENIC
SBS	Chr3	6629235	A-G	Hetero	INTERGENIC
SBS	Chr3	15389095	T-A	Hetero	INTERGENIC
SBS	Chr3	26622089	C-T	Hetero	INTERGENIC
SBS	Chr5	14584071	A-C	Homo	INTERGENIC
SBS	Chr5	16138369	T-A	Hetero	INTERGENIC
SBS	Chr7	11899153	C-A	Hetero	INTERGENIC
SBS	Chr9	2368994	G-A	Hetero	INTERGENIC
SBS	Chr9	2368995	G-A	Hetero	INTERGENIC
SBS	Chr9	7392203	C-T	Hetero	INTRON
SBS	Chr9	10061576	T-C	Hetero	INTRON
SBS	Chr9	16302195	T-A	Hetero	INTERGENIC
SBS	Chr10	5704576	G-A	Homo	INTERGENIC
SBS	Chr10	18178501	T-C	Hetero	UTR_3_PRIME
SBS	Chr11	5930359	C-T	Hetero	INTRON
SBS	Chr12	6746632	A-G	Hetero	INTERGENIC
SBS	Chr12	22703824	C-T	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	21148	21149	1
Deletion	Chr7	4131597	4131598	1
Deletion	Chr2	10266413	10266415	2
Deletion	Chr9	13405267	13405268	1
Deletion	Chr7	15388990	15388991	1
Deletion	Chr8	19358809	19358810	1
Deletion	Chr5	20581574	20581575	1
Deletion	Chr1	23369214	23369215	1
Deletion	Chr4	25930493	25930586	93
Deletion	Chr1	34830821	34830822	1
Deletion	Chr1	39974001	39982000	7999

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes