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| Mutant Information |
|---|
| Mutant Name | FN1406-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1406-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 892200 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 9635896 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 24473504 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 42276852 | A-T | Homo | UTR_3_PRIME | |
| SBS | Chr1 | 43449738 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 796062 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 797779 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 7613229 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 7664124 | T-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 18315103 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 29381766 | G-T | Hetero | INTRON | |
| SBS | Chr2 | 35007863 | C-T | Hetero | UTR_5_PRIME | |
| SBS | Chr3 | 15702223 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 20476124 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 19735662 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 23825166 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 17612421 | A-G | Homo | INTRON | |
| SBS | Chr5 | 21548142 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 1935106 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 2652742 | T-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 3183126 | A-T | Hetero | INTRON | |
| SBS | Chr7 | 21416659 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 23392480 | C-T | Hetero | INTRON | |
| SBS | Chr9 | 6637087 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 10772625 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 9126221 | A-C | Hetero | INTERGENIC |
Deletions: 13
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr2 | 345001 | 375000 | 29999 | 3 |
| Deletion | Chr11 | 4360084 | 4360086 | 2 | |
| Deletion | Chr2 | 4508067 | 4508072 | 5 | OsKitaake02g062900 |
| Deletion | Chr3 | 5118093 | 5118344 | 251 | |
| Deletion | Chr6 | 9892938 | 9892939 | 1 | |
| Deletion | Chr2 | 10266413 | 10266415 | 2 | |
| Deletion | Chr10 | 13195645 | 13195646 | 1 | |
| Deletion | Chr9 | 14935060 | 14935063 | 3 | |
| Deletion | Chr5 | 15760545 | 15760547 | 2 | |
| Deletion | Chr10 | 16343678 | 16343682 | 4 | |
| Deletion | Chr2 | 24318435 | 24318440 | 5 | |
| Deletion | Chr3 | 27158147 | 27158154 | 7 | |
| Deletion | Chr3 | 35765035 | 35765036 | 1 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 1104095 | 1104098 | 2 | OsKitaake03g016901  |
| Insertion | Chr4 | 8876534 | 8876537 | 2 | |
| Insertion | Chr5 | 23342413 | 23342416 | 2 | |
| Insertion | Chr5 | 11224004 | 11224006 | 1 | |
| Insertion | Chr6 | 16020336 | 16020338 | 1 | OsKitaake06g154000 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 3226635 | 3489688 |