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Mutant Information

Mutant Name	FN1423-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1423-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 126

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 22386285 G-A Homo SYNONYMOUS_CODING
SBS Chr1 24300387 C-A Homo INTRON
SBS Chr1 25568089 G-T Homo INTRON
SBS Chr1 25647522 A-T Homo INTRON
SBS Chr1 30512400 G-C Hetero INTERGENIC
SBS Chr1 31121148 C-T Hetero INTERGENIC
SBS Chr1 31253694 T-C Hetero INTERGENIC
SBS Chr1 32920789 T-A Hetero INTRON
SBS Chr1 37172552 T-C Hetero INTERGENIC
SBS Chr1 38910604 G-T Hetero INTERGENIC
SBS Chr1 38910607 C-A Hetero INTERGENIC
SBS Chr2 4147117 C-T Homo INTERGENIC
SBS Chr2 10380344 G-A Hetero INTERGENIC
SBS Chr2 11157442 G-A Hetero SPLICE_SITE_REGION
SBS Chr2 11750085 T-A Hetero INTERGENIC
SBS Chr2 14668770 C-T Homo INTERGENIC
SBS Chr2 15110324 C-T Homo UTR_3_PRIME
SBS Chr2 18621458 G-C Homo INTERGENIC
SBS Chr2 26465487 T-A Hetero INTERGENIC
SBS Chr2 26465488 C-A Hetero INTERGENIC
SBS Chr2 35939572 G-A Homo INTERGENIC
SBS Chr3 1844545 C-A Homo INTRON
SBS Chr3 4358251 G-T Homo STOP_GAINED OsKitaake03g062900
SBS Chr3 6987895 C-G Homo INTERGENIC
SBS Chr3 9182361 G-T Homo INTERGENIC
SBS Chr3 10657874 A-T Homo INTERGENIC
SBS Chr3 14165005 G-A Homo INTERGENIC
SBS Chr3 14724952 C-A Homo INTERGENIC
SBS Chr3 18487966 T-A Homo INTERGENIC
SBS Chr3 22699491 C-A Homo INTERGENIC
SBS Chr3 26862456 C-A Hetero INTERGENIC
SBS Chr3 30220921 G-A Hetero INTRON
SBS Chr3 32770035 C-T Hetero SYNONYMOUS_CODING
SBS Chr3 34425627 C-T Hetero INTERGENIC
SBS Chr3 35874549 C-T Homo INTERGENIC
SBS Chr3 37312991 T-A Hetero INTERGENIC
SBS Chr4 2239691 G-T Hetero INTERGENIC
SBS Chr4 6448836 C-T Hetero INTERGENIC
SBS Chr4 7102622 G-A Homo INTERGENIC
SBS Chr4 12813096 C-T Homo INTERGENIC
SBS Chr4 19108647 G-C Hetero INTERGENIC
SBS Chr5 976166 T-C Homo INTERGENIC
SBS Chr5 976174 T-C Homo INTERGENIC
SBS Chr5 2032853 C-A Homo INTERGENIC
SBS Chr5 6734527 C-T Hetero INTERGENIC
SBS Chr5 14603471 C-G Homo INTERGENIC
SBS Chr5 19643184 G-A Hetero INTERGENIC
SBS Chr5 20923255 G-A Hetero INTERGENIC
SBS Chr5 21037113 C-G Hetero INTRON
SBS Chr5 21930934 G-T Hetero INTERGENIC
SBS Chr5 22810366 C-T Hetero INTERGENIC
SBS Chr5 25598286 C-G Hetero INTERGENIC
SBS Chr5 26876473 G-A Hetero INTERGENIC
SBS Chr5 28765283 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g270200
SBS Chr6 3632161 C-T Hetero INTERGENIC
SBS Chr6 6342425 C-G Hetero INTERGENIC
SBS Chr6 6664071 T-C Hetero UTR_3_PRIME
SBS Chr6 10739218 G-T Hetero INTERGENIC
SBS Chr6 12491686 T-A Homo INTERGENIC
SBS Chr6 12491687 C-A Homo INTERGENIC
SBS Chr6 13971321 T-C Homo INTRON
SBS Chr6 21491319 A-G Homo INTRON
SBS Chr6 23456320 G-C Hetero INTERGENIC
SBS Chr6 26566489 G-T Homo INTERGENIC
SBS Chr6 28827060 G-A Hetero INTERGENIC
SBS Chr7 3762297 C-T Homo INTERGENIC
SBS Chr7 6933233 C-A Homo INTERGENIC
SBS Chr7 10202729 G-A Homo INTERGENIC
SBS Chr7 10962642 C-G Hetero INTERGENIC
SBS Chr7 10970864 C-T Homo INTERGENIC
SBS Chr7 10970867 G-A Homo INTERGENIC
SBS Chr7 10970868 G-T Homo INTERGENIC
SBS Chr7 11561238 A-C Hetero INTERGENIC
SBS Chr7 16458767 T-A Homo INTERGENIC
SBS Chr7 17342255 C-T Homo INTRON
SBS Chr7 17387512 C-A Homo INTERGENIC
SBS Chr7 19746471 G-A Homo INTERGENIC
SBS Chr7 25115550 C-A Homo INTERGENIC
SBS Chr7 25722070 G-A Homo SYNONYMOUS_CODING
SBS Chr7 29666782 A-T Homo INTERGENIC
SBS Chr8 851266 A-G Homo INTERGENIC
SBS Chr8 8470177 A-G Homo INTERGENIC
SBS Chr8 8779271 C-T Hetero INTERGENIC
SBS Chr8 24494115 T-C Hetero INTERGENIC
SBS Chr8 25282351 C-A Hetero INTERGENIC
SBS Chr8 25380085 G-A Hetero INTERGENIC
SBS Chr8 27399088 C-G Hetero INTRON
SBS Chr9 1125963 C-A Hetero INTRON
SBS Chr9 1952253 C-T Hetero INTERGENIC
SBS Chr9 4712025 G-C Hetero INTERGENIC
SBS Chr9 5071016 C-A Hetero INTERGENIC
SBS Chr9 9386049 A-G Hetero INTERGENIC
SBS Chr9 10670181 G-T Hetero INTERGENIC
SBS Chr9 10670182 C-T Hetero INTERGENIC
SBS Chr9 12637054 C-T Hetero INTERGENIC
SBS Chr9 15074460 C-T Hetero INTERGENIC
SBS Chr9 17363102 C-G Hetero INTERGENIC
SBS Chr9 18469406 G-T Hetero INTRON
SBS Chr10 924188 G-A Homo INTERGENIC
SBS Chr10 924189 C-A Homo INTERGENIC
SBS Chr10 9386919 A-G Homo INTRON
SBS Chr10 14685737 A-T Homo INTERGENIC
SBS Chr10 22395393 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g184000
SBS Chr11 5862349 C-G Hetero INTERGENIC
SBS Chr11 8246583 G-A Homo INTERGENIC
SBS Chr11 9191843 C-T Homo INTERGENIC
SBS Chr11 15818233 C-G Homo INTERGENIC
SBS Chr11 18448514 G-T Hetero INTERGENIC
SBS Chr11 19676349 G-T Hetero INTERGENIC
SBS Chr11 22648357 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake11g179800
SBS Chr11 23237444 G-A Hetero INTRON
SBS Chr11 24452221 G-C Hetero INTERGENIC
SBS Chr11 24989310 G-T Hetero INTERGENIC
SBS Chr11 27564958 G-C Hetero INTERGENIC
SBS Chr11 27753188 G-C Hetero INTERGENIC
SBS Chr11 28574174 C-A Hetero INTERGENIC
SBS Chr11 29131475 A-T Hetero INTERGENIC
SBS Chr12 2576603 C-T Hetero INTRON
SBS Chr12 6759811 C-A Hetero INTERGENIC
SBS Chr12 14584648 C-A Homo INTRON
SBS Chr12 14746312 C-A Homo INTERGENIC
SBS Chr12 17451095 G-T Hetero INTRON
SBS Chr12 17451098 G-T Hetero INTRON
SBS Chr12 23186595 C-T Homo INTERGENIC
SBS Chr12 23859578 G-T Homo INTERGENIC
SBS Chr12 25645699 C-A Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 242647 242648 1
Deletion Chr12 1674213 1674214 1
Deletion Chr7 3755413 3755424 11 OsKitaake07g048200
Deletion Chr8 6104953 6104959 6
Deletion Chr8 6158001 6166000 7999 OsKitaake08g066000
Deletion Chr6 6342234 6342235 1
Deletion Chr5 8258842 8258843 1
Deletion Chr6 8324418 8324420 2
Deletion Chr7 8464411 8464484 73
Deletion Chr7 9343787 9343790 3
Deletion Chr7 10970311 10970313 2
Deletion Chr6 13485584 13485593 9
Deletion Chr1 16469532 16469537 5
Deletion Chr12 22140062 22140077 15
Deletion Chr1 22806808 22806809 1
Deletion Chr2 23777472 23777663 191
Deletion Chr1 26340394 26340395 1
Deletion Chr2 26539847 26539848 1 OsKitaake02g265300
Deletion Chr2 27876001 27943000 66999 6
Deletion Chr4 28228479 28228489 10
Deletion Chr1 29201755 29201756 1
Deletion Chr4 29733678 29733679 1
Deletion Chr1 41900496 41900506 10

Insertions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 27224102 27224110 7
Insertion Chr6 8797435 8797439 3
Insertion Chr9 4939350 4939353 2
Insertion Chr12 5881272 5881275 2
Insertion Chr12 7589724 7589729 4
Insertion Chr5 30188951 30188954 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 6157863 6619307
Inversion Chr8 6166056 6619302

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 24273790 Chr6 6333936 OsKitaake06g082400
Translocation Chr11 24273799 Chr6 6333945 OsKitaake06g082400

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	22386285	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr1	24300387	C-A	Homo	INTRON
SBS	Chr1	25568089	G-T	Homo	INTRON
SBS	Chr1	25647522	A-T	Homo	INTRON
SBS	Chr1	30512400	G-C	Hetero	INTERGENIC
SBS	Chr1	31121148	C-T	Hetero	INTERGENIC
SBS	Chr1	31253694	T-C	Hetero	INTERGENIC
SBS	Chr1	32920789	T-A	Hetero	INTRON
SBS	Chr1	37172552	T-C	Hetero	INTERGENIC
SBS	Chr1	38910604	G-T	Hetero	INTERGENIC
SBS	Chr1	38910607	C-A	Hetero	INTERGENIC
SBS	Chr2	4147117	C-T	Homo	INTERGENIC
SBS	Chr2	10380344	G-A	Hetero	INTERGENIC
SBS	Chr2	11157442	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr2	11750085	T-A	Hetero	INTERGENIC
SBS	Chr2	14668770	C-T	Homo	INTERGENIC
SBS	Chr2	15110324	C-T	Homo	UTR_3_PRIME
SBS	Chr2	18621458	G-C	Homo	INTERGENIC
SBS	Chr2	26465487	T-A	Hetero	INTERGENIC
SBS	Chr2	26465488	C-A	Hetero	INTERGENIC
SBS	Chr2	35939572	G-A	Homo	INTERGENIC
SBS	Chr3	1844545	C-A	Homo	INTRON
SBS	Chr3	4358251	G-T	Homo	STOP_GAINED	OsKitaake03g062900
SBS	Chr3	6987895	C-G	Homo	INTERGENIC
SBS	Chr3	9182361	G-T	Homo	INTERGENIC
SBS	Chr3	10657874	A-T	Homo	INTERGENIC
SBS	Chr3	14165005	G-A	Homo	INTERGENIC
SBS	Chr3	14724952	C-A	Homo	INTERGENIC
SBS	Chr3	18487966	T-A	Homo	INTERGENIC
SBS	Chr3	22699491	C-A	Homo	INTERGENIC
SBS	Chr3	26862456	C-A	Hetero	INTERGENIC
SBS	Chr3	30220921	G-A	Hetero	INTRON
SBS	Chr3	32770035	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr3	34425627	C-T	Hetero	INTERGENIC
SBS	Chr3	35874549	C-T	Homo	INTERGENIC
SBS	Chr3	37312991	T-A	Hetero	INTERGENIC
SBS	Chr4	2239691	G-T	Hetero	INTERGENIC
SBS	Chr4	6448836	C-T	Hetero	INTERGENIC
SBS	Chr4	7102622	G-A	Homo	INTERGENIC
SBS	Chr4	12813096	C-T	Homo	INTERGENIC
SBS	Chr4	19108647	G-C	Hetero	INTERGENIC
SBS	Chr5	976166	T-C	Homo	INTERGENIC
SBS	Chr5	976174	T-C	Homo	INTERGENIC
SBS	Chr5	2032853	C-A	Homo	INTERGENIC
SBS	Chr5	6734527	C-T	Hetero	INTERGENIC
SBS	Chr5	14603471	C-G	Homo	INTERGENIC
SBS	Chr5	19643184	G-A	Hetero	INTERGENIC
SBS	Chr5	20923255	G-A	Hetero	INTERGENIC
SBS	Chr5	21037113	C-G	Hetero	INTRON
SBS	Chr5	21930934	G-T	Hetero	INTERGENIC
SBS	Chr5	22810366	C-T	Hetero	INTERGENIC
SBS	Chr5	25598286	C-G	Hetero	INTERGENIC
SBS	Chr5	26876473	G-A	Hetero	INTERGENIC
SBS	Chr5	28765283	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g270200
SBS	Chr6	3632161	C-T	Hetero	INTERGENIC
SBS	Chr6	6342425	C-G	Hetero	INTERGENIC
SBS	Chr6	6664071	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	10739218	G-T	Hetero	INTERGENIC
SBS	Chr6	12491686	T-A	Homo	INTERGENIC
SBS	Chr6	12491687	C-A	Homo	INTERGENIC
SBS	Chr6	13971321	T-C	Homo	INTRON
SBS	Chr6	21491319	A-G	Homo	INTRON
SBS	Chr6	23456320	G-C	Hetero	INTERGENIC
SBS	Chr6	26566489	G-T	Homo	INTERGENIC
SBS	Chr6	28827060	G-A	Hetero	INTERGENIC
SBS	Chr7	3762297	C-T	Homo	INTERGENIC
SBS	Chr7	6933233	C-A	Homo	INTERGENIC
SBS	Chr7	10202729	G-A	Homo	INTERGENIC
SBS	Chr7	10962642	C-G	Hetero	INTERGENIC
SBS	Chr7	10970864	C-T	Homo	INTERGENIC
SBS	Chr7	10970867	G-A	Homo	INTERGENIC
SBS	Chr7	10970868	G-T	Homo	INTERGENIC
SBS	Chr7	11561238	A-C	Hetero	INTERGENIC
SBS	Chr7	16458767	T-A	Homo	INTERGENIC
SBS	Chr7	17342255	C-T	Homo	INTRON
SBS	Chr7	17387512	C-A	Homo	INTERGENIC
SBS	Chr7	19746471	G-A	Homo	INTERGENIC
SBS	Chr7	25115550	C-A	Homo	INTERGENIC
SBS	Chr7	25722070	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr7	29666782	A-T	Homo	INTERGENIC
SBS	Chr8	851266	A-G	Homo	INTERGENIC
SBS	Chr8	8470177	A-G	Homo	INTERGENIC
SBS	Chr8	8779271	C-T	Hetero	INTERGENIC
SBS	Chr8	24494115	T-C	Hetero	INTERGENIC
SBS	Chr8	25282351	C-A	Hetero	INTERGENIC
SBS	Chr8	25380085	G-A	Hetero	INTERGENIC
SBS	Chr8	27399088	C-G	Hetero	INTRON
SBS	Chr9	1125963	C-A	Hetero	INTRON
SBS	Chr9	1952253	C-T	Hetero	INTERGENIC
SBS	Chr9	4712025	G-C	Hetero	INTERGENIC
SBS	Chr9	5071016	C-A	Hetero	INTERGENIC
SBS	Chr9	9386049	A-G	Hetero	INTERGENIC
SBS	Chr9	10670181	G-T	Hetero	INTERGENIC
SBS	Chr9	10670182	C-T	Hetero	INTERGENIC
SBS	Chr9	12637054	C-T	Hetero	INTERGENIC
SBS	Chr9	15074460	C-T	Hetero	INTERGENIC
SBS	Chr9	17363102	C-G	Hetero	INTERGENIC
SBS	Chr9	18469406	G-T	Hetero	INTRON
SBS	Chr10	924188	G-A	Homo	INTERGENIC
SBS	Chr10	924189	C-A	Homo	INTERGENIC
SBS	Chr10	9386919	A-G	Homo	INTRON
SBS	Chr10	14685737	A-T	Homo	INTERGENIC
SBS	Chr10	22395393	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g184000
SBS	Chr11	5862349	C-G	Hetero	INTERGENIC
SBS	Chr11	8246583	G-A	Homo	INTERGENIC
SBS	Chr11	9191843	C-T	Homo	INTERGENIC
SBS	Chr11	15818233	C-G	Homo	INTERGENIC
SBS	Chr11	18448514	G-T	Hetero	INTERGENIC
SBS	Chr11	19676349	G-T	Hetero	INTERGENIC
SBS	Chr11	22648357	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g179800
SBS	Chr11	23237444	G-A	Hetero	INTRON
SBS	Chr11	24452221	G-C	Hetero	INTERGENIC
SBS	Chr11	24989310	G-T	Hetero	INTERGENIC
SBS	Chr11	27564958	G-C	Hetero	INTERGENIC
SBS	Chr11	27753188	G-C	Hetero	INTERGENIC
SBS	Chr11	28574174	C-A	Hetero	INTERGENIC
SBS	Chr11	29131475	A-T	Hetero	INTERGENIC
SBS	Chr12	2576603	C-T	Hetero	INTRON
SBS	Chr12	6759811	C-A	Hetero	INTERGENIC
SBS	Chr12	14584648	C-A	Homo	INTRON
SBS	Chr12	14746312	C-A	Homo	INTERGENIC
SBS	Chr12	17451095	G-T	Hetero	INTRON
SBS	Chr12	17451098	G-T	Hetero	INTRON
SBS	Chr12	23186595	C-T	Homo	INTERGENIC
SBS	Chr12	23859578	G-T	Homo	INTERGENIC
SBS	Chr12	25645699	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	242647	242648	1
Deletion	Chr12	1674213	1674214	1
Deletion	Chr7	3755413	3755424	11	OsKitaake07g048200
Deletion	Chr8	6104953	6104959	6
Deletion	Chr8	6158001	6166000	7999	OsKitaake08g066000
Deletion	Chr6	6342234	6342235	1
Deletion	Chr5	8258842	8258843	1
Deletion	Chr6	8324418	8324420	2
Deletion	Chr7	8464411	8464484	73
Deletion	Chr7	9343787	9343790	3
Deletion	Chr7	10970311	10970313	2
Deletion	Chr6	13485584	13485593	9
Deletion	Chr1	16469532	16469537	5
Deletion	Chr12	22140062	22140077	15
Deletion	Chr1	22806808	22806809	1
Deletion	Chr2	23777472	23777663	191
Deletion	Chr1	26340394	26340395	1
Deletion	Chr2	26539847	26539848	1	OsKitaake02g265300
Deletion	Chr2	27876001	27943000	66999	6
Deletion	Chr4	28228479	28228489	10
Deletion	Chr1	29201755	29201756	1
Deletion	Chr4	29733678	29733679	1
Deletion	Chr1	41900496	41900506	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	6157863	6619307
Inversion	Chr8	6166056	6619302

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes