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Mutant Information

Mutant Name	FN1439-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1439-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 26

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16897355	G-T	Homo	INTRON
SBS	Chr1	21698432	G-A	Hetero	INTRON
SBS	Chr2	20996174	A-G	Homo	INTERGENIC
SBS	Chr2	30943158	G-T	Hetero	INTERGENIC
SBS	Chr3	3196772	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g045100
SBS	Chr4	2985570	C-T	Homo	INTERGENIC
SBS	Chr4	17234371	A-G	Homo	INTERGENIC
SBS	Chr5	25283813	G-A	Homo	INTERGENIC
SBS	Chr7	5223382	G-A	Homo	INTERGENIC
SBS	Chr7	8499439	G-C	Hetero	INTERGENIC
SBS	Chr7	21358574	C-G	Homo	INTERGENIC
SBS	Chr8	10963263	C-T	Homo	INTERGENIC
SBS	Chr8	11095177	A-T	Homo	INTERGENIC
SBS	Chr8	18011302	T-A	Homo	INTERGENIC
SBS	Chr8	18011303	T-A	Homo	INTERGENIC
SBS	Chr8	18061839	C-A	Homo	INTERGENIC
SBS	Chr8	18150128	A-T	Homo	INTERGENIC
SBS	Chr8	18150129	A-T	Homo	INTERGENIC
SBS	Chr8	18516014	A-G	Homo	INTERGENIC
SBS	Chr9	1112429	T-C	Homo	INTERGENIC
SBS	Chr9	1943418	A-C	Homo	INTERGENIC
SBS	Chr9	20665582	T-G	Hetero	INTERGENIC
SBS	Chr10	11587736	G-T	Hetero	UTR_5_PRIME
SBS	Chr10	17443693	C-T	Hetero	INTERGENIC
SBS	Chr11	27278739	C-T	Hetero	INTRON
SBS	Chr12	25208222	C-A	Hetero	SPLICE_SITE_REGION

Deletions: 10

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2307124	2307128	4
Deletion	Chr6	4631425	4631426	1
Deletion	Chr2	5363046	5363050	4	OsKitaake02g073901
Deletion	Chr8	14931174	14931175	1
Deletion	Chr10	18386000	18386001	1
Deletion	Chr4	19972001	19991000	18999	2
Deletion	Chr10	20472378	20472381	3
Deletion	Chr6	20772245	20772248	3
Deletion	Chr4	27757263	27757265	2
Deletion	Chr3	37775939	37775945	6

Insertions: 7

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	16036785	16036788	2
Insertion	Chr3	30881529	30881532	2
Insertion	Chr12	6674955	6674958	2
Insertion	Chr12	17409529	17409532	2
Insertion	Chr12	25386161	25386164	2
Insertion	Chr5	16011110	16011112	1
Insertion	Chr5	30225097	30225105	7

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	25245066	25390778
Inversion	Chr3	25363007	25390721