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Mutant Information

Mutant Name	FN1444-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1444-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 14462128 G-A Hetero INTERGENIC
SBS Chr1 16123583 A-C Hetero INTERGENIC
SBS Chr1 33865338 A-G Hetero INTERGENIC
SBS Chr2 19422756 T-C Homo INTERGENIC
SBS Chr2 26689012 G-A Homo INTERGENIC
SBS Chr2 26689014 G-A Homo INTERGENIC
SBS Chr2 26700528 T-A Homo INTERGENIC
SBS Chr3 18071520 C-A Hetero UTR_5_PRIME
SBS Chr3 28319212 T-A Hetero INTERGENIC
SBS Chr3 35894599 A-G Homo INTERGENIC
SBS Chr4 5286332 A-T Hetero INTERGENIC
SBS Chr4 13809462 G-T Hetero INTERGENIC
SBS Chr4 24151371 C-A Homo INTRON
SBS Chr5 8326255 C-T Hetero INTRON
SBS Chr6 444857 T-A Hetero UTR_5_PRIME
SBS Chr6 13880436 G-A Hetero INTERGENIC
SBS Chr6 30483070 T-C Homo INTERGENIC
SBS Chr7 26718303 G-A Hetero INTERGENIC
SBS Chr9 22124296 C-A Hetero SYNONYMOUS_CODING
SBS Chr10 7886692 G-A Homo INTRON
SBS Chr10 13279327 G-A Homo INTERGENIC
SBS Chr11 14517286 T-A Homo INTRON
SBS Chr11 16027548 T-G Homo INTERGENIC
SBS Chr12 6915590 T-G Hetero INTERGENIC
SBS Chr12 19373783 T-A Hetero SYNONYMOUS_CODING

Deletions: 240

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 169001 183000 13999 4
Deletion Chr5 311001 319000 7999 2
Deletion Chr1 370001 383000 12999 OsKitaake01g005200
Deletion Chr2 584001 614000 29999 5
Deletion Chr7 1013001 1037000 23999 7
Deletion Chr5 1095001 1134000 38999 4
Deletion Chr10 1641001 1654000 12999
Deletion Chr7 1654001 1671000 16999 6
Deletion Chr2 1707001 1717000 9999 OsKitaake02g026800
Deletion Chr3 1841001 1860000 18999 2
Deletion Chr5 1968001 1980000 11999 4
Deletion Chr2 2101001 2118000 16999 4
Deletion Chr1 2227001 2257000 29999 2
Deletion Chr5 2557001 2573000 15999 2
Deletion Chr12 2777001 2794000 16999 5
Deletion Chr5 2778001 2789000 10999 2
Deletion Chr12 2962001 2976000 13999
Deletion Chr7 3166001 3182000 15999 2
Deletion Chr8 3208001 3228000 19999 OsKitaake08g036200
Deletion Chr2 3334001 3349000 14999
Deletion Chr7 3347001 3356000 8999 OsKitaake07g042300
Deletion Chr4 3358001 3374000 15999 OsKitaake04g017201
Deletion Chr5 3372001 3387000 14999 2
Deletion Chr8 3395001 3407000 11999 OsKitaake08g038000
Deletion Chr1 3400001 3411000 10999 2
Deletion Chr6 3422001 3429000 6999 2
Deletion Chr9 3500001 3515000 14999 OsKitaake09g018000
Deletion Chr9 3542001 3556000 13999 OsKitaake09g018200
Deletion Chr10 3552001 3567000 14999 OsKitaake10g026601
Deletion Chr8 3616001 3624000 7999 2
Deletion Chr1 3642001 3659000 16999 2
Deletion Chr11 3650001 3663000 12999 7
Deletion Chr9 3702001 3737000 34999 2
Deletion Chr9 3935001 3945000 9999 OsKitaake09g020900
Deletion Chr10 4042001 4054000 11999 OsKitaake10g030600
Deletion Chr6 4088001 4100000 11999 OsKitaake06g057500
Deletion Chr10 4167001 4177000 9999 3
Deletion Chr1 4173001 4183000 9999 OsKitaake01g055800
Deletion Chr6 4191001 4204000 12999 OsKitaake06g058200
Deletion Chr3 4218001 4229000 10999 3
Deletion Chr3 4237001 4250000 12999 3
Deletion Chr2 4266001 4280000 13999 OsKitaake02g060400
Deletion Chr7 4462001 4474000 11999 2
Deletion Chr1 4470001 4479000 8999 OsKitaake01g059500
Deletion Chr7 4482001 4490000 7999 OsKitaake07g056200
Deletion Chr8 4524001 4549000 24999 2
Deletion Chr12 4712001 4724000 11999
Deletion Chr7 4785001 4810000 24999 2
Deletion Chr5 4796001 4808000 11999
Deletion Chr4 4958001 4974000 15999 OsKitaake04g022400
Deletion Chr10 5334001 5347000 12999
Deletion Chr5 5563001 5573000 9999 OsKitaake05g059600
Deletion Chr12 5783001 5800000 16999 2
Deletion Chr2 5800001 5822000 21999 2
Deletion Chr12 5807001 5818000 10999 3
Deletion Chr10 5900001 5911000 10999 OsKitaake10g040500
Deletion Chr11 5911507 5911508 1
Deletion Chr7 5990001 6000000 9999 OsKitaake07g072200
Deletion Chr4 6200001 6212000 11999
Deletion Chr7 6218001 6235000 16999 2
Deletion Chr1 6220001 6231000 10999 OsKitaake01g079000
Deletion Chr8 6269242 6269423 181
Deletion Chr12 6533001 6547000 13999 2
Deletion Chr1 6578001 6592000 13999 OsKitaake01g082900
Deletion Chr4 6622001 6635000 12999 OsKitaake04g033651
Deletion Chr4 6732001 6745000 12999
Deletion Chr6 6984001 7000000 15999 OsKitaake06g090500
Deletion Chr11 7004001 7039000 34999 3
Deletion Chr2 7438001 7452000 13999
Deletion Chr1 7631001 7641000 9999 OsKitaake01g095900
Deletion Chr9 7833001 7844000 10999 3
Deletion Chr10 8011001 8021000 9999 OsKitaake10g050500
Deletion Chr5 8166001 8173000 6999
Deletion Chr6 8233001 8256000 22999 OsKitaake06g103700
Deletion Chr5 8279001 8292000 12999 OsKitaake05g080800
Deletion Chr5 8608001 8619000 10999
Deletion Chr5 8630001 8659000 28999 OsKitaake05g082400
Deletion Chr4 8639001 8661000 21999 2
Deletion Chr9 8752001 8781000 28999 2
Deletion Chr7 8842001 8855000 12999 3
Deletion Chr5 9255001 9269000 13999 OsKitaake05g086500
Deletion Chr11 9274001 9288000 13999 3
Deletion Chr2 9326001 9340000 13999 OsKitaake02g116000
Deletion Chr11 9561001 9573000 11999 OsKitaake11g099800
Deletion Chr8 9600001 9612000 11999 2
Deletion Chr5 9860001 9874000 13999 OsKitaake05g089500
Deletion Chr12 9927001 9937000 9999
Deletion Chr11 10037001 10046000 8999 4
Deletion Chr8 10265001 10297000 31999
Deletion Chr2 10496001 10534000 37999 3
Deletion Chr4 10503001 10528000 24999
Deletion Chr4 10542001 10557000 14999 OsKitaake04g055600
Deletion Chr9 10708489 10708492 3
Deletion Chr7 10727001 10746000 18999 3
Deletion Chr12 11336001 11357000 20999 OsKitaake12g102301
Deletion Chr11 11376001 11396000 19999
Deletion Chr4 11415001 11425000 9999
Deletion Chr8 11421001 11489000 67999 3
Deletion Chr1 11584001 11593000 8999 2
Deletion Chr6 11732001 11745000 12999 OsKitaake06g128000
Deletion Chr4 12021001 12030000 8999
Deletion Chr9 12292001 12309000 16999 2
Deletion Chr9 12377001 12388000 10999 OsKitaake09g080900
Deletion Chr9 12607001 12626000 18999 OsKitaake09g083200
Deletion Chr5 12640001 12651000 10999
Deletion Chr4 12745001 12760000 14999 OsKitaake04g061000
Deletion Chr5 13042001 13080000 37999 6
Deletion Chr7 13061001 13076000 14999
Deletion Chr6 13242001 13253000 10999 2
Deletion Chr9 13353001 13378000 24999 2
Deletion Chr11 13406001 13425000 18999 2
Deletion Chr2 13480001 13489000 8999 2
Deletion Chr9 13536154 13536170 16
Deletion Chr12 13593001 13605000 11999
Deletion Chr5 13830001 13839000 8999 2
Deletion Chr4 13877001 13885000 7999
Deletion Chr1 13993001 14008000 14999 2
Deletion Chr5 14241001 14254000 12999 OsKitaake05g109300
Deletion Chr4 14332001 14340000 7999
Deletion Chr8 14376001 14384000 7999 OsKitaake08g112900
Deletion Chr1 14670001 14699000 28999 OsKitaake01g166200
Deletion Chr10 14700001 14714000 13999
Deletion Chr2 14779001 14806000 26999
Deletion Chr9 14994001 15006000 11999
Deletion Chr12 15023001 15035000 11999 OsKitaake12g118500
Deletion Chr10 15170001 15195000 24999 3
Deletion Chr6 15221001 15233000 11999
Deletion Chr2 15270001 15283000 12999 3
Deletion Chr2 15366001 15382000 15999
Deletion Chr2 15412001 15427000 14999
Deletion Chr5 15426733 15426735 2 OsKitaake05g118300
Deletion Chr3 15542001 15584000 41999
Deletion Chr7 15871001 15882000 10999 OsKitaake07g131800
Deletion Chr8 16009001 16023000 13999 3
Deletion Chr12 16144001 16162000 17999
Deletion Chr11 16199001 16211000 11999
Deletion Chr1 16332001 16346000 13999
Deletion Chr2 16339001 16358000 18999 OsKitaake02g167800
Deletion Chr7 16380001 16407000 26999
Deletion Chr1 16663001 16687000 23999 OsKitaake01g177400
Deletion Chr8 16810001 16831000 20999
Deletion Chr10 16908001 16920000 11999 OsKitaake10g115800
Deletion Chr6 16970001 16984000 13999 OsKitaake06g159500
Deletion Chr4 17373001 17400000 26999 3
Deletion Chr2 17542001 17561000 18999 OsKitaake02g176100
Deletion Chr6 17571001 17581000 9999 2
Deletion Chr1 17760001 17771000 10999 OsKitaake01g180700
Deletion Chr12 17843001 17856000 12999
Deletion Chr5 17895001 17908000 12999 OsKitaake05g138700
Deletion Chr5 18071001 18082000 10999 OsKitaake05g140700
Deletion Chr8 18086001 18098000 11999 OsKitaake08g134500
Deletion Chr5 18286001 18295000 8999
Deletion Chr6 18343001 18382000 38999 OsKitaake06g168100
Deletion Chr12 18401001 18416000 14999 OsKitaake12g134300
Deletion Chr11 18501001 18529000 27999 4
Deletion Chr7 18525001 18536000 10999 OsKitaake07g150700
Deletion Chr10 18670001 18708000 37999 5
Deletion Chr2 18737001 18754000 16999 OsKitaake02g184400
Deletion Chr5 18942001 18957000 14999 OsKitaake05g148200
Deletion Chr5 19099001 19109000 9999 2
Deletion Chr12 19268001 19284000 15999 OsKitaake12g144200
Deletion Chr2 19278943 19278948 5
Deletion Chr12 19342001 19356000 13999 2
Deletion Chr9 19575001 19595000 19999 2
Deletion Chr1 19620001 19644000 23999 2
Deletion Chr2 19796001 19810000 13999 OsKitaake02g193200
Deletion Chr9 19862001 19875000 12999 OsKitaake09g165200
Deletion Chr3 19999001 20027000 27999 OsKitaake03g230101
Deletion Chr3 20069001 20077000 7999 OsKitaake03g230201
Deletion Chr11 20138634 20138731 97
Deletion Chr2 20214001 20223000 8999
Deletion Chr3 20270001 20286000 15999
Deletion Chr3 20407001 20419000 11999
Deletion Chr3 20497001 20516000 18999
Deletion Chr7 20549589 20549591 2
Deletion Chr5 20620001 20634000 13999 2
Deletion Chr4 20797001 20805000 7999
Deletion Chr6 20873001 20885000 11999 OsKitaake06g186400
Deletion Chr8 20941001 20955000 13999 3
Deletion Chr5 20961001 20971000 9999
Deletion Chr4 21042001 21063000 20999 2
Deletion Chr9 21304001 21333000 28999 3
Deletion Chr12 21783001 21792000 8999 OsKitaake12g170900
Deletion Chr11 21850001 21869000 18999 OsKitaake11g172700
Deletion Chr11 21908001 21922000 13999 OsKitaake11g173500
Deletion Chr2 21922868 21922869 1
Deletion Chr11 22045001 22054000 8999
Deletion Chr3 22309001 22323000 13999 OsKitaake03g242600
Deletion Chr2 22556001 22570000 13999 OsKitaake02g218800
Deletion Chr10 22684001 22701000 16999 OsKitaake10g187800
Deletion Chr12 22790001 22799000 8999 OsKitaake12g179900
Deletion Chr4 23258001 23268000 9999 2
Deletion Chr11 23638001 23652000 13999 3
Deletion Chr12 23798001 23820000 21999 3
Deletion Chr12 23829001 23847000 17999 3
Deletion Chr12 23922001 23936000 13999
Deletion Chr3 24058001 24072000 13999 OsKitaake03g257300
Deletion Chr11 24232001 24246000 13999
Deletion Chr12 24376001 24405000 28999 5
Deletion Chr4 24462001 24475000 12999
Deletion Chr1 24585001 24607000 21999 2
Deletion Chr7 24932001 24942000 9999 OsKitaake07g223000
Deletion Chr8 24972001 24990000 17999 OsKitaake08g194166
Deletion Chr12 25396001 25409000 12999 6
Deletion Chr3 25803001 25812000 8999 OsKitaake03g272200
Deletion Chr4 25845001 25856000 10999 OsKitaake04g180700
Deletion Chr6 26074439 26074446 7
Deletion Chr2 26112001 26126000 13999 2
Deletion Chr7 26295001 26308000 12999 OsKitaake07g242100
Deletion Chr8 26477001 26484000 6999
Deletion Chr8 26679001 26689000 9999 2
Deletion Chr12 26879001 26893000 13999 2
Deletion Chr7 27033001 27045000 11999 2
Deletion Chr11 27165001 27176000 10999 3
Deletion Chr1 27319001 27326000 6999 2
Deletion Chr6 27354001 27361000 6999 OsKitaake06g246500
Deletion Chr2 27673001 27686000 12999 OsKitaake02g278000
Deletion Chr5 27746001 27757000 10999 2
Deletion Chr6 27837001 27851000 13999 2
Deletion Chr8 28417001 28425000 7999 OsKitaake08g240400
Deletion Chr8 28557001 28578000 20999 10
Deletion Chr7 29168001 29182000 13999 4
Deletion Chr6 29193001 29206000 12999 3
Deletion Chr1 29488001 29500000 11999 OsKitaake01g289000
Deletion Chr5 29588001 29600000 11999 6
Deletion Chr4 30131001 30143000 11999 OsKitaake04g231400
Deletion Chr6 30150001 30165000 14999
Deletion Chr5 30223346 30223347 1
Deletion Chr3 30591001 30612000 20999 OsKitaake03g321500
Deletion Chr6 30812001 30835000 22999 3
Deletion Chr2 31613001 31628000 14999 OsKitaake02g321880
Deletion Chr4 32471001 32480000 8999 2
Deletion Chr2 32534001 32543000 8999
Deletion Chr4 32813001 32837000 23999 3
Deletion Chr1 35774001 35789000 14999 3
Deletion Chr4 35862001 35875000 12999 OsKitaake04g307300
Deletion Chr2 36850001 36864000 13999 3
Deletion Chr3 37707001 37721000 13999 OsKitaake03g423700
Deletion Chr1 39384001 39396000 11999
Deletion Chr1 40940001 40952000 11999

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 30002164 30002167 2
Insertion Chr12 20083289 20083291 1 OsKitaake12g149751

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 17997370 18738946 OsKitaake02g179200
Inversion Chr2 17997376 18754203 2
Inversion Chr12 18526100 18528202 OsKitaake12g135300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14462128	G-A	Hetero	INTERGENIC
SBS	Chr1	16123583	A-C	Hetero	INTERGENIC
SBS	Chr1	33865338	A-G	Hetero	INTERGENIC
SBS	Chr2	19422756	T-C	Homo	INTERGENIC
SBS	Chr2	26689012	G-A	Homo	INTERGENIC
SBS	Chr2	26689014	G-A	Homo	INTERGENIC
SBS	Chr2	26700528	T-A	Homo	INTERGENIC
SBS	Chr3	18071520	C-A	Hetero	UTR_5_PRIME
SBS	Chr3	28319212	T-A	Hetero	INTERGENIC
SBS	Chr3	35894599	A-G	Homo	INTERGENIC
SBS	Chr4	5286332	A-T	Hetero	INTERGENIC
SBS	Chr4	13809462	G-T	Hetero	INTERGENIC
SBS	Chr4	24151371	C-A	Homo	INTRON
SBS	Chr5	8326255	C-T	Hetero	INTRON
SBS	Chr6	444857	T-A	Hetero	UTR_5_PRIME
SBS	Chr6	13880436	G-A	Hetero	INTERGENIC
SBS	Chr6	30483070	T-C	Homo	INTERGENIC
SBS	Chr7	26718303	G-A	Hetero	INTERGENIC
SBS	Chr9	22124296	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	7886692	G-A	Homo	INTRON
SBS	Chr10	13279327	G-A	Homo	INTERGENIC
SBS	Chr11	14517286	T-A	Homo	INTRON
SBS	Chr11	16027548	T-G	Homo	INTERGENIC
SBS	Chr12	6915590	T-G	Hetero	INTERGENIC
SBS	Chr12	19373783	T-A	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	169001	183000	13999	4
Deletion	Chr5	311001	319000	7999	2
Deletion	Chr1	370001	383000	12999	OsKitaake01g005200
Deletion	Chr2	584001	614000	29999	5
Deletion	Chr7	1013001	1037000	23999	7
Deletion	Chr5	1095001	1134000	38999	4
Deletion	Chr10	1641001	1654000	12999
Deletion	Chr7	1654001	1671000	16999	6
Deletion	Chr2	1707001	1717000	9999	OsKitaake02g026800
Deletion	Chr3	1841001	1860000	18999	2
Deletion	Chr5	1968001	1980000	11999	4
Deletion	Chr2	2101001	2118000	16999	4
Deletion	Chr1	2227001	2257000	29999	2
Deletion	Chr5	2557001	2573000	15999	2
Deletion	Chr12	2777001	2794000	16999	5
Deletion	Chr5	2778001	2789000	10999	2
Deletion	Chr12	2962001	2976000	13999
Deletion	Chr7	3166001	3182000	15999	2
Deletion	Chr8	3208001	3228000	19999	OsKitaake08g036200
Deletion	Chr2	3334001	3349000	14999
Deletion	Chr7	3347001	3356000	8999	OsKitaake07g042300
Deletion	Chr4	3358001	3374000	15999	OsKitaake04g017201
Deletion	Chr5	3372001	3387000	14999	2
Deletion	Chr8	3395001	3407000	11999	OsKitaake08g038000
Deletion	Chr1	3400001	3411000	10999	2
Deletion	Chr6	3422001	3429000	6999	2
Deletion	Chr9	3500001	3515000	14999	OsKitaake09g018000
Deletion	Chr9	3542001	3556000	13999	OsKitaake09g018200
Deletion	Chr10	3552001	3567000	14999	OsKitaake10g026601
Deletion	Chr8	3616001	3624000	7999	2
Deletion	Chr1	3642001	3659000	16999	2
Deletion	Chr11	3650001	3663000	12999	7
Deletion	Chr9	3702001	3737000	34999	2
Deletion	Chr9	3935001	3945000	9999	OsKitaake09g020900
Deletion	Chr10	4042001	4054000	11999	OsKitaake10g030600
Deletion	Chr6	4088001	4100000	11999	OsKitaake06g057500
Deletion	Chr10	4167001	4177000	9999	3
Deletion	Chr1	4173001	4183000	9999	OsKitaake01g055800
Deletion	Chr6	4191001	4204000	12999	OsKitaake06g058200
Deletion	Chr3	4218001	4229000	10999	3
Deletion	Chr3	4237001	4250000	12999	3
Deletion	Chr2	4266001	4280000	13999	OsKitaake02g060400
Deletion	Chr7	4462001	4474000	11999	2
Deletion	Chr1	4470001	4479000	8999	OsKitaake01g059500
Deletion	Chr7	4482001	4490000	7999	OsKitaake07g056200
Deletion	Chr8	4524001	4549000	24999	2
Deletion	Chr12	4712001	4724000	11999
Deletion	Chr7	4785001	4810000	24999	2
Deletion	Chr5	4796001	4808000	11999
Deletion	Chr4	4958001	4974000	15999	OsKitaake04g022400
Deletion	Chr10	5334001	5347000	12999
Deletion	Chr5	5563001	5573000	9999	OsKitaake05g059600
Deletion	Chr12	5783001	5800000	16999	2
Deletion	Chr2	5800001	5822000	21999	2
Deletion	Chr12	5807001	5818000	10999	3
Deletion	Chr10	5900001	5911000	10999	OsKitaake10g040500
Deletion	Chr11	5911507	5911508	1
Deletion	Chr7	5990001	6000000	9999	OsKitaake07g072200
Deletion	Chr4	6200001	6212000	11999
Deletion	Chr7	6218001	6235000	16999	2
Deletion	Chr1	6220001	6231000	10999	OsKitaake01g079000
Deletion	Chr8	6269242	6269423	181
Deletion	Chr12	6533001	6547000	13999	2
Deletion	Chr1	6578001	6592000	13999	OsKitaake01g082900
Deletion	Chr4	6622001	6635000	12999	OsKitaake04g033651
Deletion	Chr4	6732001	6745000	12999
Deletion	Chr6	6984001	7000000	15999	OsKitaake06g090500
Deletion	Chr11	7004001	7039000	34999	3
Deletion	Chr2	7438001	7452000	13999
Deletion	Chr1	7631001	7641000	9999	OsKitaake01g095900
Deletion	Chr9	7833001	7844000	10999	3
Deletion	Chr10	8011001	8021000	9999	OsKitaake10g050500
Deletion	Chr5	8166001	8173000	6999
Deletion	Chr6	8233001	8256000	22999	OsKitaake06g103700
Deletion	Chr5	8279001	8292000	12999	OsKitaake05g080800
Deletion	Chr5	8608001	8619000	10999
Deletion	Chr5	8630001	8659000	28999	OsKitaake05g082400
Deletion	Chr4	8639001	8661000	21999	2
Deletion	Chr9	8752001	8781000	28999	2
Deletion	Chr7	8842001	8855000	12999	3
Deletion	Chr5	9255001	9269000	13999	OsKitaake05g086500
Deletion	Chr11	9274001	9288000	13999	3
Deletion	Chr2	9326001	9340000	13999	OsKitaake02g116000
Deletion	Chr11	9561001	9573000	11999	OsKitaake11g099800
Deletion	Chr8	9600001	9612000	11999	2
Deletion	Chr5	9860001	9874000	13999	OsKitaake05g089500
Deletion	Chr12	9927001	9937000	9999
Deletion	Chr11	10037001	10046000	8999	4
Deletion	Chr8	10265001	10297000	31999
Deletion	Chr2	10496001	10534000	37999	3
Deletion	Chr4	10503001	10528000	24999
Deletion	Chr4	10542001	10557000	14999	OsKitaake04g055600
Deletion	Chr9	10708489	10708492	3
Deletion	Chr7	10727001	10746000	18999	3
Deletion	Chr12	11336001	11357000	20999	OsKitaake12g102301
Deletion	Chr11	11376001	11396000	19999
Deletion	Chr4	11415001	11425000	9999
Deletion	Chr8	11421001	11489000	67999	3
Deletion	Chr1	11584001	11593000	8999	2
Deletion	Chr6	11732001	11745000	12999	OsKitaake06g128000
Deletion	Chr4	12021001	12030000	8999
Deletion	Chr9	12292001	12309000	16999	2
Deletion	Chr9	12377001	12388000	10999	OsKitaake09g080900
Deletion	Chr9	12607001	12626000	18999	OsKitaake09g083200
Deletion	Chr5	12640001	12651000	10999
Deletion	Chr4	12745001	12760000	14999	OsKitaake04g061000
Deletion	Chr5	13042001	13080000	37999	6
Deletion	Chr7	13061001	13076000	14999
Deletion	Chr6	13242001	13253000	10999	2
Deletion	Chr9	13353001	13378000	24999	2
Deletion	Chr11	13406001	13425000	18999	2
Deletion	Chr2	13480001	13489000	8999	2
Deletion	Chr9	13536154	13536170	16
Deletion	Chr12	13593001	13605000	11999
Deletion	Chr5	13830001	13839000	8999	2
Deletion	Chr4	13877001	13885000	7999
Deletion	Chr1	13993001	14008000	14999	2
Deletion	Chr5	14241001	14254000	12999	OsKitaake05g109300
Deletion	Chr4	14332001	14340000	7999
Deletion	Chr8	14376001	14384000	7999	OsKitaake08g112900
Deletion	Chr1	14670001	14699000	28999	OsKitaake01g166200
Deletion	Chr10	14700001	14714000	13999
Deletion	Chr2	14779001	14806000	26999
Deletion	Chr9	14994001	15006000	11999
Deletion	Chr12	15023001	15035000	11999	OsKitaake12g118500
Deletion	Chr10	15170001	15195000	24999	3
Deletion	Chr6	15221001	15233000	11999
Deletion	Chr2	15270001	15283000	12999	3
Deletion	Chr2	15366001	15382000	15999
Deletion	Chr2	15412001	15427000	14999
Deletion	Chr5	15426733	15426735	2	OsKitaake05g118300
Deletion	Chr3	15542001	15584000	41999
Deletion	Chr7	15871001	15882000	10999	OsKitaake07g131800
Deletion	Chr8	16009001	16023000	13999	3
Deletion	Chr12	16144001	16162000	17999
Deletion	Chr11	16199001	16211000	11999
Deletion	Chr1	16332001	16346000	13999
Deletion	Chr2	16339001	16358000	18999	OsKitaake02g167800
Deletion	Chr7	16380001	16407000	26999
Deletion	Chr1	16663001	16687000	23999	OsKitaake01g177400
Deletion	Chr8	16810001	16831000	20999
Deletion	Chr10	16908001	16920000	11999	OsKitaake10g115800
Deletion	Chr6	16970001	16984000	13999	OsKitaake06g159500
Deletion	Chr4	17373001	17400000	26999	3
Deletion	Chr2	17542001	17561000	18999	OsKitaake02g176100
Deletion	Chr6	17571001	17581000	9999	2
Deletion	Chr1	17760001	17771000	10999	OsKitaake01g180700
Deletion	Chr12	17843001	17856000	12999
Deletion	Chr5	17895001	17908000	12999	OsKitaake05g138700
Deletion	Chr5	18071001	18082000	10999	OsKitaake05g140700
Deletion	Chr8	18086001	18098000	11999	OsKitaake08g134500
Deletion	Chr5	18286001	18295000	8999
Deletion	Chr6	18343001	18382000	38999	OsKitaake06g168100
Deletion	Chr12	18401001	18416000	14999	OsKitaake12g134300
Deletion	Chr11	18501001	18529000	27999	4
Deletion	Chr7	18525001	18536000	10999	OsKitaake07g150700
Deletion	Chr10	18670001	18708000	37999	5
Deletion	Chr2	18737001	18754000	16999	OsKitaake02g184400
Deletion	Chr5	18942001	18957000	14999	OsKitaake05g148200
Deletion	Chr5	19099001	19109000	9999	2
Deletion	Chr12	19268001	19284000	15999	OsKitaake12g144200
Deletion	Chr2	19278943	19278948	5
Deletion	Chr12	19342001	19356000	13999	2
Deletion	Chr9	19575001	19595000	19999	2
Deletion	Chr1	19620001	19644000	23999	2
Deletion	Chr2	19796001	19810000	13999	OsKitaake02g193200
Deletion	Chr9	19862001	19875000	12999	OsKitaake09g165200
Deletion	Chr3	19999001	20027000	27999	OsKitaake03g230101
Deletion	Chr3	20069001	20077000	7999	OsKitaake03g230201
Deletion	Chr11	20138634	20138731	97
Deletion	Chr2	20214001	20223000	8999
Deletion	Chr3	20270001	20286000	15999
Deletion	Chr3	20407001	20419000	11999
Deletion	Chr3	20497001	20516000	18999
Deletion	Chr7	20549589	20549591	2
Deletion	Chr5	20620001	20634000	13999	2
Deletion	Chr4	20797001	20805000	7999
Deletion	Chr6	20873001	20885000	11999	OsKitaake06g186400
Deletion	Chr8	20941001	20955000	13999	3
Deletion	Chr5	20961001	20971000	9999
Deletion	Chr4	21042001	21063000	20999	2
Deletion	Chr9	21304001	21333000	28999	3
Deletion	Chr12	21783001	21792000	8999	OsKitaake12g170900
Deletion	Chr11	21850001	21869000	18999	OsKitaake11g172700
Deletion	Chr11	21908001	21922000	13999	OsKitaake11g173500
Deletion	Chr2	21922868	21922869	1
Deletion	Chr11	22045001	22054000	8999
Deletion	Chr3	22309001	22323000	13999	OsKitaake03g242600
Deletion	Chr2	22556001	22570000	13999	OsKitaake02g218800
Deletion	Chr10	22684001	22701000	16999	OsKitaake10g187800
Deletion	Chr12	22790001	22799000	8999	OsKitaake12g179900
Deletion	Chr4	23258001	23268000	9999	2
Deletion	Chr11	23638001	23652000	13999	3
Deletion	Chr12	23798001	23820000	21999	3
Deletion	Chr12	23829001	23847000	17999	3
Deletion	Chr12	23922001	23936000	13999
Deletion	Chr3	24058001	24072000	13999	OsKitaake03g257300
Deletion	Chr11	24232001	24246000	13999
Deletion	Chr12	24376001	24405000	28999	5
Deletion	Chr4	24462001	24475000	12999
Deletion	Chr1	24585001	24607000	21999	2
Deletion	Chr7	24932001	24942000	9999	OsKitaake07g223000
Deletion	Chr8	24972001	24990000	17999	OsKitaake08g194166
Deletion	Chr12	25396001	25409000	12999	6
Deletion	Chr3	25803001	25812000	8999	OsKitaake03g272200
Deletion	Chr4	25845001	25856000	10999	OsKitaake04g180700
Deletion	Chr6	26074439	26074446	7
Deletion	Chr2	26112001	26126000	13999	2
Deletion	Chr7	26295001	26308000	12999	OsKitaake07g242100
Deletion	Chr8	26477001	26484000	6999
Deletion	Chr8	26679001	26689000	9999	2
Deletion	Chr12	26879001	26893000	13999	2
Deletion	Chr7	27033001	27045000	11999	2
Deletion	Chr11	27165001	27176000	10999	3
Deletion	Chr1	27319001	27326000	6999	2
Deletion	Chr6	27354001	27361000	6999	OsKitaake06g246500
Deletion	Chr2	27673001	27686000	12999	OsKitaake02g278000
Deletion	Chr5	27746001	27757000	10999	2
Deletion	Chr6	27837001	27851000	13999	2
Deletion	Chr8	28417001	28425000	7999	OsKitaake08g240400
Deletion	Chr8	28557001	28578000	20999	10
Deletion	Chr7	29168001	29182000	13999	4
Deletion	Chr6	29193001	29206000	12999	3
Deletion	Chr1	29488001	29500000	11999	OsKitaake01g289000
Deletion	Chr5	29588001	29600000	11999	6
Deletion	Chr4	30131001	30143000	11999	OsKitaake04g231400
Deletion	Chr6	30150001	30165000	14999
Deletion	Chr5	30223346	30223347	1
Deletion	Chr3	30591001	30612000	20999	OsKitaake03g321500
Deletion	Chr6	30812001	30835000	22999	3
Deletion	Chr2	31613001	31628000	14999	OsKitaake02g321880
Deletion	Chr4	32471001	32480000	8999	2
Deletion	Chr2	32534001	32543000	8999
Deletion	Chr4	32813001	32837000	23999	3
Deletion	Chr1	35774001	35789000	14999	3
Deletion	Chr4	35862001	35875000	12999	OsKitaake04g307300
Deletion	Chr2	36850001	36864000	13999	3
Deletion	Chr3	37707001	37721000	13999	OsKitaake03g423700
Deletion	Chr1	39384001	39396000	11999
Deletion	Chr1	40940001	40952000	11999

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	17997370	18738946	OsKitaake02g179200
Inversion	Chr2	17997376	18754203	2
Inversion	Chr12	18526100	18528202	OsKitaake12g135300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes