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| Mutant Information |
|---|
| Mutant Name | FN1449-S [Download] |
| Generation | M2-SOS |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1449-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 21
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 18402292 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 19197478 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 30473417 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 4453819 | C-A | Hetero | INTRON | |
| SBS | Chr3 | 7746077 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 15674483 | C-A | Hetero | INTRON | |
| SBS | Chr3 | 19079706 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 30126747 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 31546162 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 34565586 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 36282564 | T-C | Hetero | INTRON | |
| SBS | Chr6 | 15921792 | C-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 7429816 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 15051484 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 19151367 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 22970991 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 7633859 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 90778 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 1749668 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 12974478 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 8945287 | C-T | Homo | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr9 | 4410422 | 4410426 | 4 | |
| Deletion | Chr1 | 9644001 | 9660000 | 15999 | OsKitaake01g123400 |
| Deletion | Chr4 | 11077905 | 11077907 | 2 | |
| Deletion | Chr11 | 12463451 | 12463476 | 25 | |
| Deletion | Chr8 | 12608366 | 12608382 | 16 | |
| Deletion | Chr6 | 15734956 | 15734957 | 1 | |
| Deletion | Chr5 | 16950748 | 16950754 | 6 | |
| Deletion | Chr9 | 19834396 | 19834397 | 1 | |
| Deletion | Chr3 | 24158258 | 24158271 | 13 | |
| Deletion | Chr12 | 25300818 | 25300825 | 7 | OsKitaake12g206500 |
| Deletion | Chr5 | 29416959 | 29416962 | 3 |
Insertions: 5
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 6338473 | 6575093 | |
| Inversion | Chr11 | 10122009 | 10612215 | OsKitaake11g103200 |
| Inversion | Chr11 | 10122013 | 10612221 | OsKitaake11g103200 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr3 | 6575054 | Chr1 | 25128473 | OsKitaake01g243100 |
| Translocation | Chr3 | 33277681 | Chr1 | 25114436 |