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Mutant Information

Mutant Name	FN1455-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1455-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2029937 G-A Hetero UTR_3_PRIME
SBS Chr1 16373343 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g175866
SBS Chr1 17308844 G-A Hetero INTERGENIC
SBS Chr1 19729719 G-A Hetero INTERGENIC
SBS Chr1 23016388 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g219300
SBS Chr1 23071517 T-C Hetero INTERGENIC
SBS Chr1 39566918 T-A Hetero INTERGENIC
SBS Chr2 121732 A-T Homo INTERGENIC
SBS Chr2 1998971 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g030300
SBS Chr2 20458876 A-T Hetero INTERGENIC
SBS Chr3 11812210 G-A Hetero INTERGENIC
SBS Chr3 17773427 C-T Hetero INTERGENIC
SBS Chr3 27127576 T-A Hetero INTERGENIC
SBS Chr3 34555026 C-T Hetero INTERGENIC
SBS Chr4 14074728 G-A Hetero INTERGENIC
SBS Chr4 18656724 G-A Hetero INTERGENIC
SBS Chr4 20549396 T-C Hetero INTERGENIC
SBS Chr4 26948265 A-G Homo INTERGENIC
SBS Chr4 32643918 A-T Hetero INTERGENIC
SBS Chr4 34555822 A-G Hetero INTERGENIC
SBS Chr5 5582458 G-A Hetero UTR_3_PRIME
SBS Chr5 12682734 C-A Hetero INTERGENIC
SBS Chr5 15496866 C-A Hetero INTERGENIC
SBS Chr5 18697353 T-A Hetero INTERGENIC
SBS Chr6 15129607 A-G Hetero INTERGENIC
SBS Chr8 13778204 C-A Hetero INTERGENIC
SBS Chr8 17373374 A-G Hetero INTERGENIC
SBS Chr8 19641894 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake08g144300
SBS Chr8 19641895 C-T Hetero SYNONYMOUS_CODING
SBS Chr8 22950259 G-A Hetero SYNONYMOUS_CODING
SBS Chr10 616302 T-A Homo INTERGENIC
SBS Chr10 17495893 C-T Hetero SPLICE_SITE_DONOR OsKitaake10g119300
SBS Chr11 425785 G-A Hetero INTERGENIC
SBS Chr11 15253512 G-A Homo INTERGENIC
SBS Chr12 4427422 A-G Hetero INTERGENIC
SBS Chr12 9291919 G-A Hetero INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 3714656 3714660 4
Deletion Chr11 9135135 9135140 5
Deletion Chr2 12345440 12345441 1
Deletion Chr12 12810902 12810904 2
Deletion Chr2 14174412 14174414 2
Deletion Chr10 19111042 19111044 2 OsKitaake10g137500
Deletion Chr6 22150013 22150033 20
Deletion Chr3 22403001 22784000 380999 27
Deletion Chr6 25621029 25621036 7
Deletion Chr1 31371435 31371437 2
Deletion Chr1 40330744 40330747 3 OsKitaake01g437800

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 22072601 22072604 2
Insertion Chr4 32256092 32256095 2
Insertion Chr6 18260956 18260959 2
Insertion Chr8 4396401 4396404 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2029937	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	16373343	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g175866
SBS	Chr1	17308844	G-A	Hetero	INTERGENIC
SBS	Chr1	19729719	G-A	Hetero	INTERGENIC
SBS	Chr1	23016388	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g219300
SBS	Chr1	23071517	T-C	Hetero	INTERGENIC
SBS	Chr1	39566918	T-A	Hetero	INTERGENIC
SBS	Chr2	121732	A-T	Homo	INTERGENIC
SBS	Chr2	1998971	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g030300
SBS	Chr2	20458876	A-T	Hetero	INTERGENIC
SBS	Chr3	11812210	G-A	Hetero	INTERGENIC
SBS	Chr3	17773427	C-T	Hetero	INTERGENIC
SBS	Chr3	27127576	T-A	Hetero	INTERGENIC
SBS	Chr3	34555026	C-T	Hetero	INTERGENIC
SBS	Chr4	14074728	G-A	Hetero	INTERGENIC
SBS	Chr4	18656724	G-A	Hetero	INTERGENIC
SBS	Chr4	20549396	T-C	Hetero	INTERGENIC
SBS	Chr4	26948265	A-G	Homo	INTERGENIC
SBS	Chr4	32643918	A-T	Hetero	INTERGENIC
SBS	Chr4	34555822	A-G	Hetero	INTERGENIC
SBS	Chr5	5582458	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	12682734	C-A	Hetero	INTERGENIC
SBS	Chr5	15496866	C-A	Hetero	INTERGENIC
SBS	Chr5	18697353	T-A	Hetero	INTERGENIC
SBS	Chr6	15129607	A-G	Hetero	INTERGENIC
SBS	Chr8	13778204	C-A	Hetero	INTERGENIC
SBS	Chr8	17373374	A-G	Hetero	INTERGENIC
SBS	Chr8	19641894	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g144300
SBS	Chr8	19641895	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	22950259	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	616302	T-A	Homo	INTERGENIC
SBS	Chr10	17495893	C-T	Hetero	SPLICE_SITE_DONOR	OsKitaake10g119300
SBS	Chr11	425785	G-A	Hetero	INTERGENIC
SBS	Chr11	15253512	G-A	Homo	INTERGENIC
SBS	Chr12	4427422	A-G	Hetero	INTERGENIC
SBS	Chr12	9291919	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	3714656	3714660	4
Deletion	Chr11	9135135	9135140	5
Deletion	Chr2	12345440	12345441	1
Deletion	Chr12	12810902	12810904	2
Deletion	Chr2	14174412	14174414	2
Deletion	Chr10	19111042	19111044	2	OsKitaake10g137500
Deletion	Chr6	22150013	22150033	20
Deletion	Chr3	22403001	22784000	380999	27
Deletion	Chr6	25621029	25621036	7
Deletion	Chr1	31371435	31371437	2
Deletion	Chr1	40330744	40330747	3	OsKitaake01g437800

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes