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| Mutant Information |
|---|
| Mutant Name | FN1459-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1459-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 28039528 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 10657518 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 16041468 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 1195153 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 3027052 | T-C | Homo | INTRON | |
| SBS | Chr3 | 5060151 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 13291092 | A-G | Homo | INTRON | |
| SBS | Chr3 | 35575572 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g390300 |
| SBS | Chr3 | 35889746 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 36054204 | A-G | Homo | INTRON | |
| SBS | Chr4 | 1397829 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 5592164 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 9879217 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 11745313 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 13942013 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 17552537 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 5701281 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 18931961 | A-G | Hetero | INTRON | |
| SBS | Chr5 | 21127858 | T-G | Homo | INTERGENIC | |
| SBS | Chr5 | 24569638 | C-A | Homo | INTERGENIC | |
| SBS | Chr6 | 7640596 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 8906814 | A-C | Homo | UTR_3_PRIME | |
| SBS | Chr8 | 6250869 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 5300004 | G-A | Hetero | STOP_GAINED | OsKitaake09g030300 |
| SBS | Chr9 | 8219479 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 22267082 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 28855102 | A-G | Homo | NON_SYNONYMOUS_CODING | OsKitaake11g236200 |
| SBS | Chr12 | 13930746 | C-G | Hetero | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 469848 | 469852 | 4 | |
| Deletion | Chr2 | 2669499 | 2669501 | 2 | |
| Deletion | Chr7 | 2893647 | 2893648 | 1 | |
| Deletion | Chr3 | 3182091 | 3182092 | 1 | |
| Deletion | Chr8 | 8934504 | 8934505 | 1 | |
| Deletion | Chr12 | 11718044 | 11718045 | 1 | |
| Deletion | Chr10 | 13266001 | 13300000 | 33999 | |
| Deletion | Chr7 | 18392562 | 18392570 | 8 | |
| Deletion | Chr2 | 31763229 | 31763231 | 2 | |
| Deletion | Chr2 | 32780001 | 32799000 | 18999 | 3 |
| Deletion | Chr1 | 36586595 | 36586603 | 8 | |
| Deletion | Chr1 | 38835931 | 38835932 | 1 | OsKitaake01g416200 |
Insertions: 9
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr7 | 9548549 | 10450792 | OsKitaake07g096800 |
| Inversion | Chr7 | 9548573 | 10451592 | OsKitaake07g096800 |
| Inversion | Chr11 | 9621370 | 10521150 | |
| Inversion | Chr11 | 9621374 | 10521155 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 5965583 | Chr5 | 9310283 |