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Mutant Information

Mutant Name	FN1464-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1464-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5696263 C-T Hetero INTERGENIC
SBS Chr1 12238867 G-A Hetero INTERGENIC
SBS Chr1 16212401 C-T Hetero INTERGENIC
SBS Chr1 27897996 A-C Homo INTERGENIC
SBS Chr2 4310540 C-G Hetero INTERGENIC
SBS Chr2 11233964 G-A Hetero INTERGENIC
SBS Chr2 28360411 A-G Hetero INTRON
SBS Chr2 33947370 C-G Homo INTERGENIC
SBS Chr2 35229815 A-T Homo INTERGENIC
SBS Chr3 4362324 A-T Hetero UTR_5_PRIME
SBS Chr3 5878327 G-C Hetero INTERGENIC
SBS Chr3 8311495 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g114700
SBS Chr3 19494139 C-T Hetero INTERGENIC
SBS Chr4 11411682 C-T Hetero INTERGENIC
SBS Chr4 16380676 G-A Hetero INTERGENIC
SBS Chr4 18998264 G-A Hetero INTERGENIC
SBS Chr5 4514025 G-A Hetero INTERGENIC
SBS Chr5 18216260 T-C Hetero INTRON
SBS Chr5 23726475 C-T Hetero SPLICE_SITE_DONOR OsKitaake05g207900
SBS Chr5 28361361 C-A Hetero INTRON
SBS Chr5 30166877 T-A Hetero INTERGENIC
SBS Chr6 9431634 C-T Hetero INTERGENIC
SBS Chr6 22800172 C-A Hetero INTERGENIC
SBS Chr7 8012737 A-G Homo INTERGENIC
SBS Chr9 1223596 G-A Hetero INTERGENIC
SBS Chr9 11386556 G-A Hetero INTERGENIC
SBS Chr9 18606950 T-A Hetero INTRON
SBS Chr10 69891 C-T Hetero INTERGENIC
SBS Chr10 2358822 A-T Hetero INTRON
SBS Chr10 18032830 T-G Homo INTERGENIC
SBS Chr10 19309694 A-G Hetero INTERGENIC
SBS Chr10 19500422 T-A Hetero INTRON
SBS Chr11 19647626 G-A Hetero INTERGENIC
SBS Chr11 23929368 G-A Hetero INTERGENIC
SBS Chr12 11134910 A-C Hetero INTERGENIC

Deletions: 78

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 298001 310000 11999 OsKitaake10g002000
Deletion Chr3 1673001 1689000 15999 OsKitaake03g023750
Deletion Chr1 1685607 1685609 2
Deletion Chr7 1787001 1802000 14999
Deletion Chr7 1943001 1959000 15999 4
Deletion Chr2 2105001 2117000 11999 2
Deletion Chr5 2553001 2569000 15999 OsKitaake05g029000
Deletion Chr12 2779001 2794000 14999 4
Deletion Chr2 3193001 3202000 8999 4
Deletion Chr5 3635133 3635147 14
Deletion Chr9 3703001 3735000 31999 OsKitaake09g019400
Deletion Chr7 3947001 3963000 15999 OsKitaake07g050300
Deletion Chr4 4007001 4018000 10999 2
Deletion Chr6 4089001 4101000 11999 OsKitaake06g057500
Deletion Chr7 4107317 4107318 1
Deletion Chr7 4461001 4474000 12999 2
Deletion Chr4 5161001 5173000 11999 OsKitaake04g025200
Deletion Chr12 6077001 6578000 500999 50
Deletion Chr7 6219001 6232000 12999 OsKitaake07g073800
Deletion Chr11 7475001 7484000 8999 OsKitaake11g084366
Deletion Chr6 7607001 7624000 16999
Deletion Chr2 8385001 8400000 14999 OsKitaake02g106600
Deletion Chr9 9416001 9434000 17999 OsKitaake09g056700
Deletion Chr4 10197001 10219000 21999
Deletion Chr8 10268001 10280000 11999
Deletion Chr4 10538001 10556000 17999 OsKitaake04g055600
Deletion Chr12 10839001 10847000 7999 OsKitaake12g100400
Deletion Chr5 10928001 10937000 8999
Deletion Chr4 10938155 10938165 10
Deletion Chr12 11332001 11353000 20999 OsKitaake12g102301
Deletion Chr11 11378001 11392000 13999
Deletion Chr8 11413001 11495000 81999 3
Deletion Chr12 11441001 11464000 22999 OsKitaake12g102401
Deletion Chr2 11535001 11552000 16999
Deletion Chr5 12512001 12556000 43999
Deletion Chr4 12747001 12758000 10999 OsKitaake04g061000
Deletion Chr1 13116001 13127000 10999 5
Deletion Chr2 14823001 14847000 23999
Deletion Chr8 14849001 14860000 10999 OsKitaake08g116200
Deletion Chr7 15609001 15616000 6999 OsKitaake07g129700
Deletion Chr2 16065001 16113000 47999 OsKitaake02g166300
Deletion Chr2 16346001 16357000 10999 OsKitaake02g167800
Deletion Chr5 17062001 17094000 31999 OsKitaake05g131400
Deletion Chr10 17473001 17505000 31999 OsKitaake10g119300
Deletion Chr10 17558001 17568000 9999 OsKitaake10g120000
Deletion Chr6 17570001 17582000 11999 2
Deletion Chr3 17715001 17724000 8999
Deletion Chr2 17809001 17814000 4999 OsKitaake02g178300
Deletion Chr10 17994001 18073000 78999 9
Deletion Chr5 19091001 19110000 18999 2
Deletion Chr1 19635001 19644000 8999 OsKitaake01g195600
Deletion Chr3 20068001 20079000 10999 OsKitaake03g230201
Deletion Chr3 20260001 20290000 29999
Deletion Chr3 20744001 20753000 8999
Deletion Chr1 21236001 21252000 15999
Deletion Chr6 21349001 21362000 12999
Deletion Chr5 22045001 22059000 13999 OsKitaake05g179900
Deletion Chr2 22559001 22567000 7999
Deletion Chr10 22682001 22699000 16999 OsKitaake10g187800
Deletion Chr2 23630001 23741000 110999 15
Deletion Chr10 23689001 23701000 11999 OsKitaake10g203400
Deletion Chr1 23754001 23776000 21999 OsKitaake01g228000
Deletion Chr12 23801001 23817000 15999 2
Deletion Chr6 24184315 24184318 3
Deletion Chr12 25022001 25036000 13999 OsKitaake12g202800
Deletion Chr3 25113001 25132000 18999 OsKitaake03g266200
Deletion Chr2 27606001 27622000 15999 OsKitaake02g277500
Deletion Chr7 28250001 28258000 7999 2
Deletion Chr3 28589001 28607000 17999 2
Deletion Chr4 29077001 29101000 23999 4
Deletion Chr3 31010001 31034000 23999 2
Deletion Chr4 32811001 32839000 27999 5
Deletion Chr1 33737001 33755000 17999 OsKitaake01g346400
Deletion Chr2 34127001 34141000 13999 OsKitaake02g354400
Deletion Chr2 35717081 35717094 13
Deletion Chr2 36251001 36266000 14999 2
Deletion Chr4 36299791 36299793 2
Deletion Chr1 43009001 43029000 19999 OsKitaake01g474600

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 32299490 32299493 2
Insertion Chr5 10605087 10605090 2
Insertion Chr3 20034482 20034495 12
Insertion Chr12 11689040 11689042 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr2 23633334 23816988 OsKitaake02g232200

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 18067674 Chr3 19973593 OsKitaake03g230000
Translocation Chr10 18068353 Chr3 19973600 OsKitaake03g230000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5696263	C-T	Hetero	INTERGENIC
SBS	Chr1	12238867	G-A	Hetero	INTERGENIC
SBS	Chr1	16212401	C-T	Hetero	INTERGENIC
SBS	Chr1	27897996	A-C	Homo	INTERGENIC
SBS	Chr2	4310540	C-G	Hetero	INTERGENIC
SBS	Chr2	11233964	G-A	Hetero	INTERGENIC
SBS	Chr2	28360411	A-G	Hetero	INTRON
SBS	Chr2	33947370	C-G	Homo	INTERGENIC
SBS	Chr2	35229815	A-T	Homo	INTERGENIC
SBS	Chr3	4362324	A-T	Hetero	UTR_5_PRIME
SBS	Chr3	5878327	G-C	Hetero	INTERGENIC
SBS	Chr3	8311495	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g114700
SBS	Chr3	19494139	C-T	Hetero	INTERGENIC
SBS	Chr4	11411682	C-T	Hetero	INTERGENIC
SBS	Chr4	16380676	G-A	Hetero	INTERGENIC
SBS	Chr4	18998264	G-A	Hetero	INTERGENIC
SBS	Chr5	4514025	G-A	Hetero	INTERGENIC
SBS	Chr5	18216260	T-C	Hetero	INTRON
SBS	Chr5	23726475	C-T	Hetero	SPLICE_SITE_DONOR	OsKitaake05g207900
SBS	Chr5	28361361	C-A	Hetero	INTRON
SBS	Chr5	30166877	T-A	Hetero	INTERGENIC
SBS	Chr6	9431634	C-T	Hetero	INTERGENIC
SBS	Chr6	22800172	C-A	Hetero	INTERGENIC
SBS	Chr7	8012737	A-G	Homo	INTERGENIC
SBS	Chr9	1223596	G-A	Hetero	INTERGENIC
SBS	Chr9	11386556	G-A	Hetero	INTERGENIC
SBS	Chr9	18606950	T-A	Hetero	INTRON
SBS	Chr10	69891	C-T	Hetero	INTERGENIC
SBS	Chr10	2358822	A-T	Hetero	INTRON
SBS	Chr10	18032830	T-G	Homo	INTERGENIC
SBS	Chr10	19309694	A-G	Hetero	INTERGENIC
SBS	Chr10	19500422	T-A	Hetero	INTRON
SBS	Chr11	19647626	G-A	Hetero	INTERGENIC
SBS	Chr11	23929368	G-A	Hetero	INTERGENIC
SBS	Chr12	11134910	A-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	298001	310000	11999	OsKitaake10g002000
Deletion	Chr3	1673001	1689000	15999	OsKitaake03g023750
Deletion	Chr1	1685607	1685609	2
Deletion	Chr7	1787001	1802000	14999
Deletion	Chr7	1943001	1959000	15999	4
Deletion	Chr2	2105001	2117000	11999	2
Deletion	Chr5	2553001	2569000	15999	OsKitaake05g029000
Deletion	Chr12	2779001	2794000	14999	4
Deletion	Chr2	3193001	3202000	8999	4
Deletion	Chr5	3635133	3635147	14
Deletion	Chr9	3703001	3735000	31999	OsKitaake09g019400
Deletion	Chr7	3947001	3963000	15999	OsKitaake07g050300
Deletion	Chr4	4007001	4018000	10999	2
Deletion	Chr6	4089001	4101000	11999	OsKitaake06g057500
Deletion	Chr7	4107317	4107318	1
Deletion	Chr7	4461001	4474000	12999	2
Deletion	Chr4	5161001	5173000	11999	OsKitaake04g025200
Deletion	Chr12	6077001	6578000	500999	50
Deletion	Chr7	6219001	6232000	12999	OsKitaake07g073800
Deletion	Chr11	7475001	7484000	8999	OsKitaake11g084366
Deletion	Chr6	7607001	7624000	16999
Deletion	Chr2	8385001	8400000	14999	OsKitaake02g106600
Deletion	Chr9	9416001	9434000	17999	OsKitaake09g056700
Deletion	Chr4	10197001	10219000	21999
Deletion	Chr8	10268001	10280000	11999
Deletion	Chr4	10538001	10556000	17999	OsKitaake04g055600
Deletion	Chr12	10839001	10847000	7999	OsKitaake12g100400
Deletion	Chr5	10928001	10937000	8999
Deletion	Chr4	10938155	10938165	10
Deletion	Chr12	11332001	11353000	20999	OsKitaake12g102301
Deletion	Chr11	11378001	11392000	13999
Deletion	Chr8	11413001	11495000	81999	3
Deletion	Chr12	11441001	11464000	22999	OsKitaake12g102401
Deletion	Chr2	11535001	11552000	16999
Deletion	Chr5	12512001	12556000	43999
Deletion	Chr4	12747001	12758000	10999	OsKitaake04g061000
Deletion	Chr1	13116001	13127000	10999	5
Deletion	Chr2	14823001	14847000	23999
Deletion	Chr8	14849001	14860000	10999	OsKitaake08g116200
Deletion	Chr7	15609001	15616000	6999	OsKitaake07g129700
Deletion	Chr2	16065001	16113000	47999	OsKitaake02g166300
Deletion	Chr2	16346001	16357000	10999	OsKitaake02g167800
Deletion	Chr5	17062001	17094000	31999	OsKitaake05g131400
Deletion	Chr10	17473001	17505000	31999	OsKitaake10g119300
Deletion	Chr10	17558001	17568000	9999	OsKitaake10g120000
Deletion	Chr6	17570001	17582000	11999	2
Deletion	Chr3	17715001	17724000	8999
Deletion	Chr2	17809001	17814000	4999	OsKitaake02g178300
Deletion	Chr10	17994001	18073000	78999	9
Deletion	Chr5	19091001	19110000	18999	2
Deletion	Chr1	19635001	19644000	8999	OsKitaake01g195600
Deletion	Chr3	20068001	20079000	10999	OsKitaake03g230201
Deletion	Chr3	20260001	20290000	29999
Deletion	Chr3	20744001	20753000	8999
Deletion	Chr1	21236001	21252000	15999
Deletion	Chr6	21349001	21362000	12999
Deletion	Chr5	22045001	22059000	13999	OsKitaake05g179900
Deletion	Chr2	22559001	22567000	7999
Deletion	Chr10	22682001	22699000	16999	OsKitaake10g187800
Deletion	Chr2	23630001	23741000	110999	15
Deletion	Chr10	23689001	23701000	11999	OsKitaake10g203400
Deletion	Chr1	23754001	23776000	21999	OsKitaake01g228000
Deletion	Chr12	23801001	23817000	15999	2
Deletion	Chr6	24184315	24184318	3
Deletion	Chr12	25022001	25036000	13999	OsKitaake12g202800
Deletion	Chr3	25113001	25132000	18999	OsKitaake03g266200
Deletion	Chr2	27606001	27622000	15999	OsKitaake02g277500
Deletion	Chr7	28250001	28258000	7999	2
Deletion	Chr3	28589001	28607000	17999	2
Deletion	Chr4	29077001	29101000	23999	4
Deletion	Chr3	31010001	31034000	23999	2
Deletion	Chr4	32811001	32839000	27999	5
Deletion	Chr1	33737001	33755000	17999	OsKitaake01g346400
Deletion	Chr2	34127001	34141000	13999	OsKitaake02g354400
Deletion	Chr2	35717081	35717094	13
Deletion	Chr2	36251001	36266000	14999	2
Deletion	Chr4	36299791	36299793	2
Deletion	Chr1	43009001	43029000	19999	OsKitaake01g474600

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	23633334	23816988	OsKitaake02g232200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes