Search Kitaake

Mutant Information

Mutant Name	FN1471-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1471-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5325917 A-T Homo INTERGENIC
SBS Chr1 42854335 G-A Hetero INTERGENIC
SBS Chr3 2262254 T-A Hetero INTERGENIC
SBS Chr3 2837550 T-C Hetero INTERGENIC
SBS Chr3 16546623 T-C Hetero INTERGENIC
SBS Chr3 29056958 G-C Hetero INTERGENIC
SBS Chr3 31298533 T-A Hetero INTERGENIC
SBS Chr3 33644885 C-T Hetero INTERGENIC
SBS Chr3 35718453 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g392400
SBS Chr4 14532648 G-A Homo INTERGENIC
SBS Chr4 33959658 A-C Homo INTRON
SBS Chr5 14872366 A-T Hetero INTERGENIC
SBS Chr5 20091201 A-G Hetero UTR_3_PRIME
SBS Chr6 10201562 C-T Hetero INTERGENIC
SBS Chr6 26052428 C-T Homo UTR_3_PRIME
SBS Chr7 6066355 A-G Hetero INTERGENIC
SBS Chr7 10792474 T-A Hetero INTERGENIC
SBS Chr8 188548 C-T Hetero INTERGENIC
SBS Chr8 15139623 G-C Hetero INTERGENIC
SBS Chr8 16570078 T-C Hetero INTRON
SBS Chr9 19865614 G-A Homo INTERGENIC
SBS Chr10 11663261 A-G Hetero INTRON
SBS Chr10 19712447 C-T Homo NON_SYNONYMOUS_CODING OsKitaake10g146000
SBS Chr11 11180585 G-A Homo INTERGENIC
SBS Chr11 12607498 C-T Hetero INTERGENIC
SBS Chr11 14766129 G-A Hetero INTERGENIC
SBS Chr11 17595450 C-T Hetero INTERGENIC
SBS Chr12 122369 T-A Hetero INTRON
SBS Chr12 2172404 C-A Hetero UTR_3_PRIME
SBS Chr12 21150684 T-C Homo INTERGENIC
SBS Chr12 21150687 A-T Homo INTERGENIC

Deletions: 31

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 2575681 2575682 1 OsKitaake11g037200
Deletion Chr1 2665997 2666003 6
Deletion Chr7 4247600 4247601 1
Deletion Chr1 5654457 5654460 3
Deletion Chr2 6376001 6391000 14999
Deletion Chr2 6443001 6458000 14999
Deletion Chr10 8674720 8675052 332
Deletion Chr4 9032450 9032460 10
Deletion Chr8 9351001 9359000 7999
Deletion Chr3 9558429 9558431 2
Deletion Chr1 9643001 9661000 17999 OsKitaake01g123400
Deletion Chr1 11189001 11203000 13999 OsKitaake01g137600
Deletion Chr9 11323460 11323462 2
Deletion Chr1 13459001 13473000 13999 OsKitaake01g156600
Deletion Chr3 14563001 14582000 18999 OsKitaake03g189700
Deletion Chr12 21168075 21168084 9 OsKitaake12g166200
Deletion Chr4 22731162 22731163 1
Deletion Chr1 23257001 23273000 15999 OsKitaake01g222400
Deletion Chr2 24407001 24430000 22999
Deletion Chr4 24463001 24473000 9999
Deletion Chr1 25480941 25480947 6
Deletion Chr7 26214992 26214994 2
Deletion Chr8 26355001 26365000 9999 2
Deletion Chr12 26723001 26735000 11999 OsKitaake12g222100
Deletion Chr11 26874407 26874420 13
Deletion Chr6 27919001 27935000 15999 OsKitaake06g253400
Deletion Chr3 28584001 28597000 12999 OsKitaake03g296500
Deletion Chr3 29561350 29561352 2
Deletion Chr4 31548001 31556000 7999 OsKitaake04g248400
Deletion Chr4 31795001 31805000 9999
Deletion Chr1 43742723 43742730 7

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 27630046 27630049 2
Insertion Chr7 1635343 1635347 3
Insertion Chr9 20556571 20556574 2
Insertion Chr10 2138793 2138796 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5325917	A-T	Homo	INTERGENIC
SBS	Chr1	42854335	G-A	Hetero	INTERGENIC
SBS	Chr3	2262254	T-A	Hetero	INTERGENIC
SBS	Chr3	2837550	T-C	Hetero	INTERGENIC
SBS	Chr3	16546623	T-C	Hetero	INTERGENIC
SBS	Chr3	29056958	G-C	Hetero	INTERGENIC
SBS	Chr3	31298533	T-A	Hetero	INTERGENIC
SBS	Chr3	33644885	C-T	Hetero	INTERGENIC
SBS	Chr3	35718453	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g392400
SBS	Chr4	14532648	G-A	Homo	INTERGENIC
SBS	Chr4	33959658	A-C	Homo	INTRON
SBS	Chr5	14872366	A-T	Hetero	INTERGENIC
SBS	Chr5	20091201	A-G	Hetero	UTR_3_PRIME
SBS	Chr6	10201562	C-T	Hetero	INTERGENIC
SBS	Chr6	26052428	C-T	Homo	UTR_3_PRIME
SBS	Chr7	6066355	A-G	Hetero	INTERGENIC
SBS	Chr7	10792474	T-A	Hetero	INTERGENIC
SBS	Chr8	188548	C-T	Hetero	INTERGENIC
SBS	Chr8	15139623	G-C	Hetero	INTERGENIC
SBS	Chr8	16570078	T-C	Hetero	INTRON
SBS	Chr9	19865614	G-A	Homo	INTERGENIC
SBS	Chr10	11663261	A-G	Hetero	INTRON
SBS	Chr10	19712447	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g146000
SBS	Chr11	11180585	G-A	Homo	INTERGENIC
SBS	Chr11	12607498	C-T	Hetero	INTERGENIC
SBS	Chr11	14766129	G-A	Hetero	INTERGENIC
SBS	Chr11	17595450	C-T	Hetero	INTERGENIC
SBS	Chr12	122369	T-A	Hetero	INTRON
SBS	Chr12	2172404	C-A	Hetero	UTR_3_PRIME
SBS	Chr12	21150684	T-C	Homo	INTERGENIC
SBS	Chr12	21150687	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	2575681	2575682	1	OsKitaake11g037200
Deletion	Chr1	2665997	2666003	6
Deletion	Chr7	4247600	4247601	1
Deletion	Chr1	5654457	5654460	3
Deletion	Chr2	6376001	6391000	14999
Deletion	Chr2	6443001	6458000	14999
Deletion	Chr10	8674720	8675052	332
Deletion	Chr4	9032450	9032460	10
Deletion	Chr8	9351001	9359000	7999
Deletion	Chr3	9558429	9558431	2
Deletion	Chr1	9643001	9661000	17999	OsKitaake01g123400
Deletion	Chr1	11189001	11203000	13999	OsKitaake01g137600
Deletion	Chr9	11323460	11323462	2
Deletion	Chr1	13459001	13473000	13999	OsKitaake01g156600
Deletion	Chr3	14563001	14582000	18999	OsKitaake03g189700
Deletion	Chr12	21168075	21168084	9	OsKitaake12g166200
Deletion	Chr4	22731162	22731163	1
Deletion	Chr1	23257001	23273000	15999	OsKitaake01g222400
Deletion	Chr2	24407001	24430000	22999
Deletion	Chr4	24463001	24473000	9999
Deletion	Chr1	25480941	25480947	6
Deletion	Chr7	26214992	26214994	2
Deletion	Chr8	26355001	26365000	9999	2
Deletion	Chr12	26723001	26735000	11999	OsKitaake12g222100
Deletion	Chr11	26874407	26874420	13
Deletion	Chr6	27919001	27935000	15999	OsKitaake06g253400
Deletion	Chr3	28584001	28597000	12999	OsKitaake03g296500
Deletion	Chr3	29561350	29561352	2
Deletion	Chr4	31548001	31556000	7999	OsKitaake04g248400
Deletion	Chr4	31795001	31805000	9999
Deletion	Chr1	43742723	43742730	7

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes