Search Kitaake

Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN1478-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1478-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2763751 G-A Hetero INTERGENIC
SBS Chr1 7971025 A-C Hetero INTERGENIC
SBS Chr1 8156520 C-T Hetero INTERGENIC
SBS Chr1 8431768 C-T Homo UTR_3_PRIME
SBS Chr1 36259876 T-C Hetero INTRON
SBS Chr1 40580315 C-T Homo INTRON
SBS Chr2 1233867 T-C Homo INTERGENIC
SBS Chr2 16165948 C-T Hetero INTERGENIC
SBS Chr2 18712560 C-T Hetero INTERGENIC
SBS Chr3 12478651 G-A Hetero INTRON
SBS Chr3 17800333 G-A Hetero INTERGENIC
SBS Chr4 4503061 T-C Hetero INTERGENIC
SBS Chr4 14720650 C-T Hetero INTERGENIC
SBS Chr5 324158 T-C Hetero INTERGENIC
SBS Chr5 15749947 G-A Hetero INTRON
SBS Chr5 16855194 G-A Hetero INTERGENIC
SBS Chr5 18687629 G-C Hetero INTERGENIC
SBS Chr5 23843020 G-A Hetero INTERGENIC
SBS Chr6 4220867 G-A Hetero INTERGENIC
SBS Chr6 5628902 C-G Hetero UTR_3_PRIME
SBS Chr6 16492489 G-A Homo INTERGENIC
SBS Chr6 16675104 G-T Homo INTERGENIC
SBS Chr6 18070618 A-T Homo INTERGENIC
SBS Chr6 22094458 C-T Homo INTERGENIC
SBS Chr6 24510135 C-T Hetero INTERGENIC
SBS Chr7 2014931 G-T Hetero INTRON
SBS Chr7 26829814 C-A Homo INTERGENIC
SBS Chr8 12230372 A-T Hetero INTERGENIC
SBS Chr8 28802807 G-T Homo INTRON
SBS Chr9 18259932 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g141766
SBS Chr10 2399350 C-T Hetero INTERGENIC
SBS Chr11 9649117 T-A Hetero INTERGENIC
SBS Chr12 1590710 A-T Hetero INTERGENIC
SBS Chr12 19471595 G-A Hetero SYNONYMOUS_CODING

Deletions: 86

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 191052 191061 9 OsKitaake07g001500
Deletion Chr6 751001 769000 17999 2
Deletion Chr3 1076001 1103000 26999 OsKitaake03g016901
Deletion Chr2 1301001 1312000 10999 2
Deletion Chr5 1362001 1383000 20999 OsKitaake05g017100
Deletion Chr1 1412734 1412736 2
Deletion Chr11 1432001 1442000 9999 4
Deletion Chr2 1634001 1652000 17999 3
Deletion Chr3 1672001 1690000 17999 OsKitaake03g023750
Deletion Chr1 1860001 1872000 11999 2
Deletion Chr11 2058001 2090000 31999 7
Deletion Chr4 2448001 2691000 242999 6
Deletion Chr3 2522001 2540000 17999 2
Deletion Chr7 2553115 2553116 1
Deletion Chr4 3244001 3263000 18999 OsKitaake04g016876
Deletion Chr12 3397001 3405000 7999 OsKitaake12g048100
Deletion Chr7 3603001 3613000 9999 OsKitaake07g046000
Deletion Chr3 3947402 3947404 2
Deletion Chr6 4189001 4203000 13999 2
Deletion Chr6 4274001 4284000 9999 OsKitaake06g059100
Deletion Chr1 4467001 4482000 14999 OsKitaake01g059500
Deletion Chr2 4732001 4742000 9999 OsKitaake02g065500
Deletion Chr12 4867001 4879000 11999 OsKitaake12g063000
Deletion Chr7 5988001 6004000 15999 OsKitaake07g072200
Deletion Chr3 6090001 6110000 19999 OsKitaake03g087400
Deletion Chr5 6126001 6133000 6999 OsKitaake05g063700
Deletion Chr2 6215001 6232000 16999 2
Deletion Chr8 8610401 8610403 2
Deletion Chr1 8876001 8888000 11999 3
Deletion Chr5 9597616 9597617 1 OsKitaake05g088200
Deletion Chr1 9646001 9656000 9999 OsKitaake01g123400
Deletion Chr1 11189001 11203000 13999 OsKitaake01g137600
Deletion Chr6 11479001 11490000 10999 OsKitaake06g126800
Deletion Chr9 11655601 11655603 2
Deletion Chr6 13351001 13368000 16999 2
Deletion Chr1 13459001 13474000 14999 OsKitaake01g156600
Deletion Chr7 13926086 13926092 6
Deletion Chr9 14148001 14159000 10999
Deletion Chr9 14232001 14255000 22999 2
Deletion Chr4 14332001 14342000 9999
Deletion Chr1 14677001 14695000 17999 OsKitaake01g166200
Deletion Chr8 15245001 15258000 12999 OsKitaake08g119000
Deletion Chr7 15403557 15403568 11
Deletion Chr2 16079001 16089000 9999 OsKitaake02g166300
Deletion Chr2 16308001 16322000 13999 OsKitaake02g167700
Deletion Chr1 16660001 16683000 22999 2
Deletion Chr3 16707001 16718000 10999 OsKitaake03g210400
Deletion Chr10 17478001 17491000 12999 OsKitaake10g119300
Deletion Chr10 17555001 17564000 8999 OsKitaake10g120000
Deletion Chr4 18555896 18555897 1
Deletion Chr2 18700001 18706000 5999 OsKitaake02g184000
Deletion Chr10 19374001 19385000 10999 OsKitaake10g141100
Deletion Chr5 19843001 19852000 8999 OsKitaake05g157700
Deletion Chr11 20699001 20706000 6999 OsKitaake11g162800
Deletion Chr1 20824001 20834000 9999 OsKitaake01g204200
Deletion Chr9 22338001 22352000 13999 OsKitaake09g202500
Deletion Chr10 22369001 22379000 9999 OsKitaake10g183600
Deletion Chr7 23020001 23030000 9999 OsKitaake07g198000
Deletion Chr7 23232001 23239000 6999 OsKitaake07g201600
Deletion Chr7 23305496 23305510 14
Deletion Chr7 24384001 24394000 9999 OsKitaake07g217100
Deletion Chr2 24408001 24432000 23999
Deletion Chr6 24446814 24446818 4
Deletion Chr3 24489001 24498000 8999 OsKitaake03g261900
Deletion Chr6 25965001 25977000 11999 2
Deletion Chr1 26060001 26069000 8999
Deletion Chr11 26329001 26340000 10999 4
Deletion Chr8 26355001 26366000 10999 2
Deletion Chr12 26696001 26701000 4999 2
Deletion Chr4 26728001 26740000 11999 OsKitaake04g193100
Deletion Chr5 26956001 26967000 10999 OsKitaake05g241500
Deletion Chr12 27130001 27154000 23999 OsKitaake12g228600
Deletion Chr8 27328001 27339000 10999 4
Deletion Chr6 28537001 28552000 14999 2
Deletion Chr7 28650626 28650627 1
Deletion Chr4 28728001 28745000 16999 OsKitaake04g215400
Deletion Chr6 30976001 30988000 11999 2
Deletion Chr6 31007001 31016000 8999 3
Deletion Chr4 31548001 31559000 10999 OsKitaake04g248400
Deletion Chr4 31870001 31879000 8999 OsKitaake04g252800
Deletion Chr2 32659001 32666000 6999 OsKitaake02g334500
Deletion Chr1 33454001 33475000 20999 OsKitaake01g342500
Deletion Chr3 33952001 33973000 20999 2
Deletion Chr3 34833001 34846000 12999 OsKitaake03g380100
Deletion Chr3 36388001 36397000 8999 3
Deletion Chr1 41003001 41017000 13999 OsKitaake01g447600

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 19122371 19122374 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 9070702 9843311 OsKitaake12g094300
Inversion Chr12 9070714 9154482
Inversion Chr7 12515815 12550218 OsKitaake07g111600
Inversion Chr7 12515836 12550224 OsKitaake07g111600

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 2089509 Chr8 2044416 2
Translocation Chr11 2089749 Chr8 2044334 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2763751	G-A	Hetero	INTERGENIC
SBS	Chr1	7971025	A-C	Hetero	INTERGENIC
SBS	Chr1	8156520	C-T	Hetero	INTERGENIC
SBS	Chr1	8431768	C-T	Homo	UTR_3_PRIME
SBS	Chr1	36259876	T-C	Hetero	INTRON
SBS	Chr1	40580315	C-T	Homo	INTRON
SBS	Chr2	1233867	T-C	Homo	INTERGENIC
SBS	Chr2	16165948	C-T	Hetero	INTERGENIC
SBS	Chr2	18712560	C-T	Hetero	INTERGENIC
SBS	Chr3	12478651	G-A	Hetero	INTRON
SBS	Chr3	17800333	G-A	Hetero	INTERGENIC
SBS	Chr4	4503061	T-C	Hetero	INTERGENIC
SBS	Chr4	14720650	C-T	Hetero	INTERGENIC
SBS	Chr5	324158	T-C	Hetero	INTERGENIC
SBS	Chr5	15749947	G-A	Hetero	INTRON
SBS	Chr5	16855194	G-A	Hetero	INTERGENIC
SBS	Chr5	18687629	G-C	Hetero	INTERGENIC
SBS	Chr5	23843020	G-A	Hetero	INTERGENIC
SBS	Chr6	4220867	G-A	Hetero	INTERGENIC
SBS	Chr6	5628902	C-G	Hetero	UTR_3_PRIME
SBS	Chr6	16492489	G-A	Homo	INTERGENIC
SBS	Chr6	16675104	G-T	Homo	INTERGENIC
SBS	Chr6	18070618	A-T	Homo	INTERGENIC
SBS	Chr6	22094458	C-T	Homo	INTERGENIC
SBS	Chr6	24510135	C-T	Hetero	INTERGENIC
SBS	Chr7	2014931	G-T	Hetero	INTRON
SBS	Chr7	26829814	C-A	Homo	INTERGENIC
SBS	Chr8	12230372	A-T	Hetero	INTERGENIC
SBS	Chr8	28802807	G-T	Homo	INTRON
SBS	Chr9	18259932	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g141766
SBS	Chr10	2399350	C-T	Hetero	INTERGENIC
SBS	Chr11	9649117	T-A	Hetero	INTERGENIC
SBS	Chr12	1590710	A-T	Hetero	INTERGENIC
SBS	Chr12	19471595	G-A	Hetero	SYNONYMOUS_CODING

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	191052	191061	9	OsKitaake07g001500
Deletion	Chr6	751001	769000	17999	2
Deletion	Chr3	1076001	1103000	26999	OsKitaake03g016901
Deletion	Chr2	1301001	1312000	10999	2
Deletion	Chr5	1362001	1383000	20999	OsKitaake05g017100
Deletion	Chr1	1412734	1412736	2
Deletion	Chr11	1432001	1442000	9999	4
Deletion	Chr2	1634001	1652000	17999	3
Deletion	Chr3	1672001	1690000	17999	OsKitaake03g023750
Deletion	Chr1	1860001	1872000	11999	2
Deletion	Chr11	2058001	2090000	31999	7
Deletion	Chr4	2448001	2691000	242999	6
Deletion	Chr3	2522001	2540000	17999	2
Deletion	Chr7	2553115	2553116	1
Deletion	Chr4	3244001	3263000	18999	OsKitaake04g016876
Deletion	Chr12	3397001	3405000	7999	OsKitaake12g048100
Deletion	Chr7	3603001	3613000	9999	OsKitaake07g046000
Deletion	Chr3	3947402	3947404	2
Deletion	Chr6	4189001	4203000	13999	2
Deletion	Chr6	4274001	4284000	9999	OsKitaake06g059100
Deletion	Chr1	4467001	4482000	14999	OsKitaake01g059500
Deletion	Chr2	4732001	4742000	9999	OsKitaake02g065500
Deletion	Chr12	4867001	4879000	11999	OsKitaake12g063000
Deletion	Chr7	5988001	6004000	15999	OsKitaake07g072200
Deletion	Chr3	6090001	6110000	19999	OsKitaake03g087400
Deletion	Chr5	6126001	6133000	6999	OsKitaake05g063700
Deletion	Chr2	6215001	6232000	16999	2
Deletion	Chr8	8610401	8610403	2
Deletion	Chr1	8876001	8888000	11999	3
Deletion	Chr5	9597616	9597617	1	OsKitaake05g088200
Deletion	Chr1	9646001	9656000	9999	OsKitaake01g123400
Deletion	Chr1	11189001	11203000	13999	OsKitaake01g137600
Deletion	Chr6	11479001	11490000	10999	OsKitaake06g126800
Deletion	Chr9	11655601	11655603	2
Deletion	Chr6	13351001	13368000	16999	2
Deletion	Chr1	13459001	13474000	14999	OsKitaake01g156600
Deletion	Chr7	13926086	13926092	6
Deletion	Chr9	14148001	14159000	10999
Deletion	Chr9	14232001	14255000	22999	2
Deletion	Chr4	14332001	14342000	9999
Deletion	Chr1	14677001	14695000	17999	OsKitaake01g166200
Deletion	Chr8	15245001	15258000	12999	OsKitaake08g119000
Deletion	Chr7	15403557	15403568	11
Deletion	Chr2	16079001	16089000	9999	OsKitaake02g166300
Deletion	Chr2	16308001	16322000	13999	OsKitaake02g167700
Deletion	Chr1	16660001	16683000	22999	2
Deletion	Chr3	16707001	16718000	10999	OsKitaake03g210400
Deletion	Chr10	17478001	17491000	12999	OsKitaake10g119300
Deletion	Chr10	17555001	17564000	8999	OsKitaake10g120000
Deletion	Chr4	18555896	18555897	1
Deletion	Chr2	18700001	18706000	5999	OsKitaake02g184000
Deletion	Chr10	19374001	19385000	10999	OsKitaake10g141100
Deletion	Chr5	19843001	19852000	8999	OsKitaake05g157700
Deletion	Chr11	20699001	20706000	6999	OsKitaake11g162800
Deletion	Chr1	20824001	20834000	9999	OsKitaake01g204200
Deletion	Chr9	22338001	22352000	13999	OsKitaake09g202500
Deletion	Chr10	22369001	22379000	9999	OsKitaake10g183600
Deletion	Chr7	23020001	23030000	9999	OsKitaake07g198000
Deletion	Chr7	23232001	23239000	6999	OsKitaake07g201600
Deletion	Chr7	23305496	23305510	14
Deletion	Chr7	24384001	24394000	9999	OsKitaake07g217100
Deletion	Chr2	24408001	24432000	23999
Deletion	Chr6	24446814	24446818	4
Deletion	Chr3	24489001	24498000	8999	OsKitaake03g261900
Deletion	Chr6	25965001	25977000	11999	2
Deletion	Chr1	26060001	26069000	8999
Deletion	Chr11	26329001	26340000	10999	4
Deletion	Chr8	26355001	26366000	10999	2
Deletion	Chr12	26696001	26701000	4999	2
Deletion	Chr4	26728001	26740000	11999	OsKitaake04g193100
Deletion	Chr5	26956001	26967000	10999	OsKitaake05g241500
Deletion	Chr12	27130001	27154000	23999	OsKitaake12g228600
Deletion	Chr8	27328001	27339000	10999	4
Deletion	Chr6	28537001	28552000	14999	2
Deletion	Chr7	28650626	28650627	1
Deletion	Chr4	28728001	28745000	16999	OsKitaake04g215400
Deletion	Chr6	30976001	30988000	11999	2
Deletion	Chr6	31007001	31016000	8999	3
Deletion	Chr4	31548001	31559000	10999	OsKitaake04g248400
Deletion	Chr4	31870001	31879000	8999	OsKitaake04g252800
Deletion	Chr2	32659001	32666000	6999	OsKitaake02g334500
Deletion	Chr1	33454001	33475000	20999	OsKitaake01g342500
Deletion	Chr3	33952001	33973000	20999	2
Deletion	Chr3	34833001	34846000	12999	OsKitaake03g380100
Deletion	Chr3	36388001	36397000	8999	3
Deletion	Chr1	41003001	41017000	13999	OsKitaake01g447600

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	9070702	9843311	OsKitaake12g094300
Inversion	Chr12	9070714	9154482
Inversion	Chr7	12515815	12550218	OsKitaake07g111600
Inversion	Chr7	12515836	12550224	OsKitaake07g111600

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes