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Mutant Information

Mutant Name	FN1486-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1486-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 14

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4153523 T-A Hetero INTRON
SBS Chr1 19304784 C-T Homo INTERGENIC
SBS Chr1 20926571 C-T Homo INTERGENIC
SBS Chr1 24599036 A-T Homo SYNONYMOUS_CODING
SBS Chr2 28487921 G-A Homo INTERGENIC
SBS Chr3 19107019 G-T Hetero INTERGENIC
SBS Chr4 35363910 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g299300
SBS Chr5 8027106 G-T Homo UTR_5_PRIME
SBS Chr6 838316 G-A Hetero INTERGENIC
SBS Chr6 17830747 G-A Homo INTERGENIC
SBS Chr9 6839178 C-T Hetero INTERGENIC
SBS Chr10 8464924 C-G Homo INTERGENIC
SBS Chr11 6407575 G-A Hetero INTERGENIC
SBS Chr11 10765743 A-T Hetero INTERGENIC

Deletions: 80

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 353001 382000 28999 OsKitaake01g005200
Deletion Chr6 749001 776000 26999 2
Deletion Chr8 920001 941000 20999 OsKitaake08g012200
Deletion Chr3 1079001 1112000 32999 2
Deletion Chr1 1193189 1193190 1
Deletion Chr5 1368001 1382000 13999 OsKitaake05g017100
Deletion Chr4 1562181 1562187 6
Deletion Chr2 1628001 1651000 22999 4
Deletion Chr3 1659040 1659042 2 OsKitaake03g023500
Deletion Chr12 1739001 1748000 8999 OsKitaake12g026400
Deletion Chr8 2061001 2080000 18999 3
Deletion Chr2 2365001 2382000 16999 OsKitaake02g034800
Deletion Chr8 2395001 2405000 9999
Deletion Chr5 2468641 2468642 1
Deletion Chr3 2514001 2544000 29999 4
Deletion Chr9 2584001 2600000 15999 2
Deletion Chr3 2676001 2696000 19999 OsKitaake03g038200
Deletion Chr8 3024001 3043000 18999 2
Deletion Chr1 3234001 3269000 34999 7
Deletion Chr2 3293001 3303000 9999 OsKitaake02g048000
Deletion Chr3 3596001 3603000 6999 OsKitaake03g050800
Deletion Chr2 4266001 4281000 14999 OsKitaake02g060400
Deletion Chr8 4771001 4791000 19999 3
Deletion Chr9 5059073 5059077 4
Deletion Chr6 6140001 6156000 15999 2
Deletion Chr1 6217001 6232000 14999 OsKitaake01g079000
Deletion Chr9 7343796 7343803 7 OsKitaake09g042001
Deletion Chr11 7474001 7485000 10999 OsKitaake11g084366
Deletion Chr8 7612960 7612961 1
Deletion Chr6 8511001 8521000 9999 OsKitaake06g105800
Deletion Chr5 8632001 8656000 23999 OsKitaake05g082400
Deletion Chr4 8936001 8950000 13999 OsKitaake04g046100
Deletion Chr12 9061001 9089000 27999 OsKitaake12g090132
Deletion Chr8 10683908 10683912 4
Deletion Chr1 10722010 10722020 10
Deletion Chr12 10951001 10962000 10999 OsKitaake12g101500
Deletion Chr8 11429001 11488000 58999 3
Deletion Chr4 11721632 11721634 2
Deletion Chr2 12744001 12765000 20999 4
Deletion Chr1 13457001 13473000 15999 2
Deletion Chr10 13808260 13808263 3
Deletion Chr9 14238001 14252000 13999 OsKitaake09g095800
Deletion Chr7 14993001 15007000 13999 OsKitaake07g125401
Deletion Chr2 16074001 16098000 23999 OsKitaake02g166300
Deletion Chr1 16660001 16687000 26999 2
Deletion Chr9 16965001 16977000 11999
Deletion Chr4 17409001 17437000 27999 5
Deletion Chr10 17475001 17507000 31999 2
Deletion Chr10 18523001 18536000 12999 OsKitaake10g131700
Deletion Chr2 18683001 18707000 23999 2
Deletion Chr2 19197155 19197156 1
Deletion Chr5 19842001 19852000 9999 OsKitaake05g157700
Deletion Chr8 20707543 20707547 4
Deletion Chr1 21044001 21056000 11999 2
Deletion Chr9 21497001 21871000 373999 64
Deletion Chr5 21988001 21998000 9999 5
Deletion Chr5 22047001 22060000 12999 OsKitaake05g179900
Deletion Chr11 22571001 22581000 9999 OsKitaake11g179100
Deletion Chr10 22684001 22702000 17999 OsKitaake10g187800
Deletion Chr4 22742001 22755000 12999 5
Deletion Chr12 24324001 24334000 9999 2
Deletion Chr1 24520867 24520876 9
Deletion Chr6 25994001 26007000 12999 2
Deletion Chr1 26058001 26068000 9999
Deletion Chr12 27144001 27154000 9999
Deletion Chr1 27236001 27250000 13999 3
Deletion Chr2 27240032 27240039 7 OsKitaake02g273900
Deletion Chr2 27604001 27621000 16999 OsKitaake02g277500
Deletion Chr1 27893585 27893601 16
Deletion Chr6 27918001 27934000 15999 OsKitaake06g253400
Deletion Chr8 28128001 28166000 37999 4
Deletion Chr3 28184001 28195000 10999 OsKitaake03g291400
Deletion Chr7 28246001 28255000 8999 OsKitaake07g267000
Deletion Chr6 28540001 28550000 9999 2
Deletion Chr3 28580001 28594000 13999 OsKitaake03g296500
Deletion Chr1 33444001 33474000 29999 2
Deletion Chr2 34088001 34100000 11999 OsKitaake02g354200
Deletion Chr3 34116001 34127000 10999 OsKitaake03g368700
Deletion Chr3 37702001 37716000 13999 2
Deletion Chr1 42703001 42713000 9999

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 26370609 26370612 2
Insertion Chr9 20801238 20801241 2
Insertion Chr12 19828679 19828682 2

Inversions: 9

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 14255363 15196036
Inversion Chr5 14255370 15196036
Inversion Chr5 15150692 16046417
Inversion Chr5 15150703 15190713
Inversion Chr5 21890718 22067599 OsKitaake05g180100
Inversion Chr5 21890730 22067621 OsKitaake05g180100
Inversion Chr5 25925825 26259164 OsKitaake05g232300
Inversion Chr5 25925923 26263432
Inversion Chr3 34111182 34111407

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 1447795 Chr3 37645817
Translocation Chr12 1447805 Chr3 37639989 OsKitaake03g422800
Translocation Chr6 3431426 Chr3 37646097 OsKitaake06g048101
Translocation Chr6 3431439 Chr3 37645828 OsKitaake06g048101
Translocation Chr12 27014291 Chr5 30031491

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4153523	T-A	Hetero	INTRON
SBS	Chr1	19304784	C-T	Homo	INTERGENIC
SBS	Chr1	20926571	C-T	Homo	INTERGENIC
SBS	Chr1	24599036	A-T	Homo	SYNONYMOUS_CODING
SBS	Chr2	28487921	G-A	Homo	INTERGENIC
SBS	Chr3	19107019	G-T	Hetero	INTERGENIC
SBS	Chr4	35363910	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g299300
SBS	Chr5	8027106	G-T	Homo	UTR_5_PRIME
SBS	Chr6	838316	G-A	Hetero	INTERGENIC
SBS	Chr6	17830747	G-A	Homo	INTERGENIC
SBS	Chr9	6839178	C-T	Hetero	INTERGENIC
SBS	Chr10	8464924	C-G	Homo	INTERGENIC
SBS	Chr11	6407575	G-A	Hetero	INTERGENIC
SBS	Chr11	10765743	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	353001	382000	28999	OsKitaake01g005200
Deletion	Chr6	749001	776000	26999	2
Deletion	Chr8	920001	941000	20999	OsKitaake08g012200
Deletion	Chr3	1079001	1112000	32999	2
Deletion	Chr1	1193189	1193190	1
Deletion	Chr5	1368001	1382000	13999	OsKitaake05g017100
Deletion	Chr4	1562181	1562187	6
Deletion	Chr2	1628001	1651000	22999	4
Deletion	Chr3	1659040	1659042	2	OsKitaake03g023500
Deletion	Chr12	1739001	1748000	8999	OsKitaake12g026400
Deletion	Chr8	2061001	2080000	18999	3
Deletion	Chr2	2365001	2382000	16999	OsKitaake02g034800
Deletion	Chr8	2395001	2405000	9999
Deletion	Chr5	2468641	2468642	1
Deletion	Chr3	2514001	2544000	29999	4
Deletion	Chr9	2584001	2600000	15999	2
Deletion	Chr3	2676001	2696000	19999	OsKitaake03g038200
Deletion	Chr8	3024001	3043000	18999	2
Deletion	Chr1	3234001	3269000	34999	7
Deletion	Chr2	3293001	3303000	9999	OsKitaake02g048000
Deletion	Chr3	3596001	3603000	6999	OsKitaake03g050800
Deletion	Chr2	4266001	4281000	14999	OsKitaake02g060400
Deletion	Chr8	4771001	4791000	19999	3
Deletion	Chr9	5059073	5059077	4
Deletion	Chr6	6140001	6156000	15999	2
Deletion	Chr1	6217001	6232000	14999	OsKitaake01g079000
Deletion	Chr9	7343796	7343803	7	OsKitaake09g042001
Deletion	Chr11	7474001	7485000	10999	OsKitaake11g084366
Deletion	Chr8	7612960	7612961	1
Deletion	Chr6	8511001	8521000	9999	OsKitaake06g105800
Deletion	Chr5	8632001	8656000	23999	OsKitaake05g082400
Deletion	Chr4	8936001	8950000	13999	OsKitaake04g046100
Deletion	Chr12	9061001	9089000	27999	OsKitaake12g090132
Deletion	Chr8	10683908	10683912	4
Deletion	Chr1	10722010	10722020	10
Deletion	Chr12	10951001	10962000	10999	OsKitaake12g101500
Deletion	Chr8	11429001	11488000	58999	3
Deletion	Chr4	11721632	11721634	2
Deletion	Chr2	12744001	12765000	20999	4
Deletion	Chr1	13457001	13473000	15999	2
Deletion	Chr10	13808260	13808263	3
Deletion	Chr9	14238001	14252000	13999	OsKitaake09g095800
Deletion	Chr7	14993001	15007000	13999	OsKitaake07g125401
Deletion	Chr2	16074001	16098000	23999	OsKitaake02g166300
Deletion	Chr1	16660001	16687000	26999	2
Deletion	Chr9	16965001	16977000	11999
Deletion	Chr4	17409001	17437000	27999	5
Deletion	Chr10	17475001	17507000	31999	2
Deletion	Chr10	18523001	18536000	12999	OsKitaake10g131700
Deletion	Chr2	18683001	18707000	23999	2
Deletion	Chr2	19197155	19197156	1
Deletion	Chr5	19842001	19852000	9999	OsKitaake05g157700
Deletion	Chr8	20707543	20707547	4
Deletion	Chr1	21044001	21056000	11999	2
Deletion	Chr9	21497001	21871000	373999	64
Deletion	Chr5	21988001	21998000	9999	5
Deletion	Chr5	22047001	22060000	12999	OsKitaake05g179900
Deletion	Chr11	22571001	22581000	9999	OsKitaake11g179100
Deletion	Chr10	22684001	22702000	17999	OsKitaake10g187800
Deletion	Chr4	22742001	22755000	12999	5
Deletion	Chr12	24324001	24334000	9999	2
Deletion	Chr1	24520867	24520876	9
Deletion	Chr6	25994001	26007000	12999	2
Deletion	Chr1	26058001	26068000	9999
Deletion	Chr12	27144001	27154000	9999
Deletion	Chr1	27236001	27250000	13999	3
Deletion	Chr2	27240032	27240039	7	OsKitaake02g273900
Deletion	Chr2	27604001	27621000	16999	OsKitaake02g277500
Deletion	Chr1	27893585	27893601	16
Deletion	Chr6	27918001	27934000	15999	OsKitaake06g253400
Deletion	Chr8	28128001	28166000	37999	4
Deletion	Chr3	28184001	28195000	10999	OsKitaake03g291400
Deletion	Chr7	28246001	28255000	8999	OsKitaake07g267000
Deletion	Chr6	28540001	28550000	9999	2
Deletion	Chr3	28580001	28594000	13999	OsKitaake03g296500
Deletion	Chr1	33444001	33474000	29999	2
Deletion	Chr2	34088001	34100000	11999	OsKitaake02g354200
Deletion	Chr3	34116001	34127000	10999	OsKitaake03g368700
Deletion	Chr3	37702001	37716000	13999	2
Deletion	Chr1	42703001	42713000	9999

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	14255363	15196036
Inversion	Chr5	14255370	15196036
Inversion	Chr5	15150692	16046417
Inversion	Chr5	15150703	15190713
Inversion	Chr5	21890718	22067599	OsKitaake05g180100
Inversion	Chr5	21890730	22067621	OsKitaake05g180100
Inversion	Chr5	25925825	26259164	OsKitaake05g232300
Inversion	Chr5	25925923	26263432
Inversion	Chr3	34111182	34111407

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes