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Mutant Information

Mutant Name	FN1501-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1501-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 20

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11102606 C-T Hetero INTERGENIC
SBS Chr1 12226456 G-A Hetero INTERGENIC
SBS Chr1 34634445 G-T Hetero INTERGENIC
SBS Chr2 744038 A-C Hetero INTERGENIC
SBS Chr3 22989874 C-A Homo INTERGENIC
SBS Chr3 37204293 G-A Hetero SYNONYMOUS_CODING
SBS Chr4 8440973 G-A Homo INTERGENIC
SBS Chr4 10125647 C-T Hetero INTERGENIC
SBS Chr4 13683296 A-C Homo INTERGENIC
SBS Chr4 26356520 C-T Homo INTRON
SBS Chr4 35822244 G-T Homo INTERGENIC
SBS Chr4 35893865 C-T Homo INTRON
SBS Chr5 10535621 C-A Hetero INTERGENIC
SBS Chr5 27792046 C-T Hetero SYNONYMOUS_CODING
SBS Chr7 24309599 G-A Hetero INTERGENIC
SBS Chr8 8620440 C-G Hetero INTRON
SBS Chr8 14496212 A-G Hetero INTERGENIC
SBS Chr8 28284792 A-T Hetero START_GAINED
SBS Chr11 18763359 A-T Homo INTERGENIC
SBS Chr12 12096797 C-G Hetero INTRON

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2744768 2744769 1
Deletion Chr9 6686003 6686105 102
Deletion Chr2 7258001 7501000 242999 22
Deletion Chr2 16283309 16283311 2
Deletion Chr10 16836158 16836160 2
Deletion Chr2 16919001 17460000 540999 28
Deletion Chr1 17283622 17284286 664
Deletion Chr11 29628001 29718000 89999 14
Deletion Chr4 31359963 31359964 1

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 20050183 20050185 1
Insertion Chr3 22492942 22492944 1
Insertion Chr4 11165908 11165910 1
Insertion Chr5 30256122 30256124 1
Insertion Chr6 3731626 3731629 2 OsKitaake06g051700
Insertion Chr10 10258550 10258552 1
Insertion Chr12 16545651 16545655 3

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 7170876 7948560 2
Inversion Chr4 7170882 7948569 2
Inversion Chr2 16357103 16488977

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 35299874 Chr1 41747980

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11102606	C-T	Hetero	INTERGENIC
SBS	Chr1	12226456	G-A	Hetero	INTERGENIC
SBS	Chr1	34634445	G-T	Hetero	INTERGENIC
SBS	Chr2	744038	A-C	Hetero	INTERGENIC
SBS	Chr3	22989874	C-A	Homo	INTERGENIC
SBS	Chr3	37204293	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr4	8440973	G-A	Homo	INTERGENIC
SBS	Chr4	10125647	C-T	Hetero	INTERGENIC
SBS	Chr4	13683296	A-C	Homo	INTERGENIC
SBS	Chr4	26356520	C-T	Homo	INTRON
SBS	Chr4	35822244	G-T	Homo	INTERGENIC
SBS	Chr4	35893865	C-T	Homo	INTRON
SBS	Chr5	10535621	C-A	Hetero	INTERGENIC
SBS	Chr5	27792046	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr7	24309599	G-A	Hetero	INTERGENIC
SBS	Chr8	8620440	C-G	Hetero	INTRON
SBS	Chr8	14496212	A-G	Hetero	INTERGENIC
SBS	Chr8	28284792	A-T	Hetero	START_GAINED
SBS	Chr11	18763359	A-T	Homo	INTERGENIC
SBS	Chr12	12096797	C-G	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2744768	2744769	1
Deletion	Chr9	6686003	6686105	102
Deletion	Chr2	7258001	7501000	242999	22
Deletion	Chr2	16283309	16283311	2
Deletion	Chr10	16836158	16836160	2
Deletion	Chr2	16919001	17460000	540999	28
Deletion	Chr1	17283622	17284286	664
Deletion	Chr11	29628001	29718000	89999	14
Deletion	Chr4	31359963	31359964	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	7170876	7948560	2
Inversion	Chr4	7170882	7948569	2
Inversion	Chr2	16357103	16488977

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes