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| Mutant Information |
|---|
| Mutant Name | FN1504-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1504-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 4487946 | A-G | Hetero | SPLICE_SITE_REGION | |
| SBS | Chr2 | 36534979 | C-T | Hetero | INTRON | |
| SBS | Chr3 | 4576582 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 4576584 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 5004295 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 18866780 | C-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 29954114 | C-A | Hetero | INTRON | |
| SBS | Chr4 | 4447140 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 14092992 | C-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 19149101 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 13559942 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g104800 |
| SBS | Chr5 | 16625277 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 22764579 | A-C | Hetero | INTRON | |
| SBS | Chr5 | 22909443 | T-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 15584245 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 28526621 | T-A | Hetero | INTRON | |
| SBS | Chr8 | 11249023 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 13050845 | T-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 18979302 | A-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 1047158 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 9019194 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake09g052700 |
| SBS | Chr10 | 6065193 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 14082999 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 20769899 | T-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 1090690 | C-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 11445322 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 16725737 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 17926845 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 13171128 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 18196040 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 21181213 | C-T | Hetero | SYNONYMOUS_CODING |
Deletions: 17
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 863294 | 863297 | 3 | |
| Deletion | Chr6 | 3483928 | 3483945 | 17 | |
| Deletion | Chr4 | 5125321 | 5125325 | 4 | |
| Deletion | Chr12 | 12579109 | 12579110 | 1 | |
| Deletion | Chr1 | 14487292 | 14487302 | 10 | |
| Deletion | Chr1 | 17707233 | 17707234 | 1 | |
| Deletion | Chr9 | 18699001 | 18900000 | 200999 | 25 |
| Deletion | Chr6 | 19225733 | 19225735 | 2 | |
| Deletion | Chr10 | 20769935 | 20769942 | 7 | |
| Deletion | Chr12 | 22446217 | 22446218 | 1 | |
| Deletion | Chr12 | 23861276 | 23861278 | 2 | |
| Deletion | Chr7 | 24009259 | 24009272 | 13 | |
| Deletion | Chr12 | 25170164 | 25170171 | 7 | OsKitaake12g204300 |
| Deletion | Chr8 | 25929708 | 25929718 | 10 | |
| Deletion | Chr5 | 28905140 | 28905144 | 4 | |
| Deletion | Chr6 | 29467242 | 29467243 | 1 | |
| Deletion | Chr1 | 41436268 | 41436274 | 6 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 7568515 | 7568518 | 2 | |
| Insertion | Chr3 | 14482901 | 14482904 | 2 | |
| Insertion | Chr8 | 3052266 | 3052268 | 1 | OsKitaake08g034000  |
| Insertion | Chr8 | 26536260 | 26536264 | 3 | |
| Insertion | Chr11 | 1940349 | 1940352 | 2 |