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Mutant Information

Mutant Name	FN1516-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1516-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 29

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8192897 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g102200
SBS Chr1 24568982 G-A Homo INTERGENIC
SBS Chr1 41056205 G-A Hetero INTRON
SBS Chr1 41279136 G-A Homo UTR_3_PRIME
SBS Chr2 10819545 C-T Hetero INTERGENIC
SBS Chr2 10984318 C-G Hetero INTERGENIC
SBS Chr2 22602214 G-A Hetero INTERGENIC
SBS Chr3 3842110 T-C Hetero INTERGENIC
SBS Chr3 5241004 A-G Hetero INTERGENIC
SBS Chr3 5604212 G-A Hetero INTERGENIC
SBS Chr3 14322576 C-A Homo INTERGENIC
SBS Chr3 15815051 C-G Hetero INTERGENIC
SBS Chr4 283814 C-T Hetero INTERGENIC
SBS Chr4 27608714 T-C Hetero INTERGENIC
SBS Chr4 28830387 T-C Hetero UTR_3_PRIME
SBS Chr6 7109392 G-A Homo INTERGENIC
SBS Chr6 19253156 A-G Hetero INTERGENIC
SBS Chr7 10713122 G-A Hetero INTERGENIC
SBS Chr7 18140445 A-G Hetero INTERGENIC
SBS Chr7 28493604 G-T Hetero INTERGENIC
SBS Chr8 20283820 T-G Hetero INTRON
SBS Chr8 24292012 A-T Homo INTERGENIC
SBS Chr8 26655995 T-G Hetero INTERGENIC
SBS Chr10 15248566 G-A Hetero INTERGENIC
SBS Chr12 4207909 G-T Hetero INTERGENIC
SBS Chr12 5839502 C-T Hetero INTERGENIC
SBS Chr12 11057727 T-G Homo INTERGENIC
SBS Chr12 25155913 G-T Hetero INTERGENIC
SBS Chr12 25155914 A-T Hetero INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 77143 77152 9
Deletion Chr3 4089589 4089590 1
Deletion Chr9 7381111 7381119 8
Deletion Chr12 8953405 8953413 8
Deletion Chr5 9330040 9330045 5
Deletion Chr4 9968888 9968908 20
Deletion Chr5 11311779 11311782 3
Deletion Chr3 12345520 12345521 1
Deletion Chr5 12424107 12424108 1
Deletion Chr11 12463451 12463476 25
Deletion Chr10 15402546 15402547 1
Deletion Chr9 15818001 15818003 2
Deletion Chr6 18099415 18099541 126
Deletion Chr4 19429001 19453000 23999 2
Deletion Chr6 20225037 20225046 9
Deletion Chr12 22155885 22155889 4
Deletion Chr3 23437001 23510000 72999 4
Deletion Chr7 23637583 23637585 2
Deletion Chr3 27453541 27453542 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 4070341 4070345 3
Insertion Chr11 16709257 16709260 2
Insertion Chr4 2728023 2728026 2
Insertion Chr11 12462747 12462749 1

Inversions: 5

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 8343754 8434319 OsKitaake06g104600
Inversion Chr6 8343758 8434325 OsKitaake06g104600
Inversion Chr3 23328179 23592604 OsKitaake03g251100
Inversion Chr3 23328181 23510245 OsKitaake03g251100
Inversion Chr5 24959130 25015929

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8192897	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g102200
SBS	Chr1	24568982	G-A	Homo	INTERGENIC
SBS	Chr1	41056205	G-A	Hetero	INTRON
SBS	Chr1	41279136	G-A	Homo	UTR_3_PRIME
SBS	Chr2	10819545	C-T	Hetero	INTERGENIC
SBS	Chr2	10984318	C-G	Hetero	INTERGENIC
SBS	Chr2	22602214	G-A	Hetero	INTERGENIC
SBS	Chr3	3842110	T-C	Hetero	INTERGENIC
SBS	Chr3	5241004	A-G	Hetero	INTERGENIC
SBS	Chr3	5604212	G-A	Hetero	INTERGENIC
SBS	Chr3	14322576	C-A	Homo	INTERGENIC
SBS	Chr3	15815051	C-G	Hetero	INTERGENIC
SBS	Chr4	283814	C-T	Hetero	INTERGENIC
SBS	Chr4	27608714	T-C	Hetero	INTERGENIC
SBS	Chr4	28830387	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	7109392	G-A	Homo	INTERGENIC
SBS	Chr6	19253156	A-G	Hetero	INTERGENIC
SBS	Chr7	10713122	G-A	Hetero	INTERGENIC
SBS	Chr7	18140445	A-G	Hetero	INTERGENIC
SBS	Chr7	28493604	G-T	Hetero	INTERGENIC
SBS	Chr8	20283820	T-G	Hetero	INTRON
SBS	Chr8	24292012	A-T	Homo	INTERGENIC
SBS	Chr8	26655995	T-G	Hetero	INTERGENIC
SBS	Chr10	15248566	G-A	Hetero	INTERGENIC
SBS	Chr12	4207909	G-T	Hetero	INTERGENIC
SBS	Chr12	5839502	C-T	Hetero	INTERGENIC
SBS	Chr12	11057727	T-G	Homo	INTERGENIC
SBS	Chr12	25155913	G-T	Hetero	INTERGENIC
SBS	Chr12	25155914	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	77143	77152	9
Deletion	Chr3	4089589	4089590	1
Deletion	Chr9	7381111	7381119	8
Deletion	Chr12	8953405	8953413	8
Deletion	Chr5	9330040	9330045	5
Deletion	Chr4	9968888	9968908	20
Deletion	Chr5	11311779	11311782	3
Deletion	Chr3	12345520	12345521	1
Deletion	Chr5	12424107	12424108	1
Deletion	Chr11	12463451	12463476	25
Deletion	Chr10	15402546	15402547	1
Deletion	Chr9	15818001	15818003	2
Deletion	Chr6	18099415	18099541	126
Deletion	Chr4	19429001	19453000	23999	2
Deletion	Chr6	20225037	20225046	9
Deletion	Chr12	22155885	22155889	4
Deletion	Chr3	23437001	23510000	72999	4
Deletion	Chr7	23637583	23637585	2
Deletion	Chr3	27453541	27453542	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	8343754	8434319	OsKitaake06g104600
Inversion	Chr6	8343758	8434325	OsKitaake06g104600
Inversion	Chr3	23328179	23592604	OsKitaake03g251100
Inversion	Chr3	23328181	23510245	OsKitaake03g251100
Inversion	Chr5	24959130	25015929

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes