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| Mutant Information |
|---|
| Mutant Name | FN1517-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1517-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 22951386 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 8011566 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 12928877 | C-T | Hetero | INTRON | |
| SBS | Chr2 | 19522484 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 31263622 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 7099008 | T-A | Homo | INTERGENIC | |
| SBS | Chr3 | 20933303 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 3904390 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 21302909 | T-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 21302916 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 28537350 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 12257136 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 20811462 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 29572767 | C-T | Hetero | INTRON | |
| SBS | Chr7 | 12614560 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 25226611 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 26358665 | A-G | Homo | INTRON | |
| SBS | Chr7 | 26358666 | G-A | Homo | INTRON | |
| SBS | Chr8 | 275254 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr8 | 1597308 | A-T | Homo | INTRON | |
| SBS | Chr9 | 12116659 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 13299903 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 20534514 | A-G | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g157300 |
| SBS | Chr10 | 23900681 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 8264199 | T-C | Homo | INTRON | |
| SBS | Chr11 | 12714307 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 22673487 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 25404320 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 24405180 | A-G | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 6841750 | 6841752 | 2 | |
| Deletion | Chr10 | 7624354 | 7624355 | 1 | |
| Deletion | Chr1 | 9123590 | 9123591 | 1 | |
| Deletion | Chr6 | 12701100 | 12701101 | 1 | |
| Deletion | Chr3 | 14171773 | 14171775 | 2 | |
| Deletion | Chr6 | 14991355 | 14991356 | 1 | |
| Deletion | Chr12 | 20175419 | 20175420 | 1 | |
| Deletion | Chr9 | 22319228 | 22319233 | 5 | |
| Deletion | Chr2 | 22585826 | 22585828 | 2 | OsKitaake02g219200 |
| Deletion | Chr6 | 26045521 | 26045527 | 6 | |
| Deletion | Chr3 | 33180786 | 33180787 | 1 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 6534993 | 6534995 | 1 | |
| Insertion | Chr8 | 25565097 | 25565100 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 25792653 | 25869072 | 2 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 25869070 | Chr2 | 14781570 | OsKitaake04g180900 |