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| Mutant Information |
|---|
| Mutant Name | FN1546-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN1546-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 25
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 9109129 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 16717936 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 5325560 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 8923378 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 14295295 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 18541405 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 14297556 | G-T | Hetero | START_GAINED | |
| SBS | Chr4 | 1306312 | A-T | Homo | INTERGENIC | |
| SBS | Chr4 | 5798278 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 8173112 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 11970226 | C-G | Hetero | INTRON | |
| SBS | Chr4 | 12015700 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 35847526 | T-G | Hetero | INTRON | |
| SBS | Chr5 | 8362983 | C-T | Homo | INTERGENIC | |
| SBS | Chr5 | 13795217 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 17885997 | C-A | Homo | INTRON | |
| SBS | Chr6 | 16368747 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 307035 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 1887429 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 20643959 | A-T | Homo | INTERGENIC | |
| SBS | Chr8 | 20123829 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 4101593 | T-A | Homo | SPLICE_SITE_REGION | |
| SBS | Chr11 | 4101594 | T-A | Homo | SPLICE_SITE_REGION | |
| SBS | Chr12 | 55436 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 12720494 | G-A | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 18326 | 18327 | 1 | |
| Deletion | Chr11 | 4808553 | 4808559 | 6 | OsKitaake11g061900 |
| Deletion | Chr10 | 9687894 | 9687895 | 1 | |
| Deletion | Chr12 | 10328415 | 10328417 | 2 | |
| Deletion | Chr8 | 10389139 | 10389145 | 6 | |
| Deletion | Chr11 | 19051433 | 19051436 | 3 | |
| Deletion | Chr6 | 23906200 | 23906201 | 1 | |
| Deletion | Chr4 | 25395850 | 25395851 | 1 | OsKitaake04g173900 |
| Deletion | Chr1 | 26221193 | 26221195 | 2 | |
| Deletion | Chr7 | 27183670 | 27183678 | 8 | |
| Deletion | Chr11 | 29625001 | 29732000 | 106999 | 15 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 23114844 | 23114847 | 2 | |
| Insertion | Chr7 | 24172933 | 24172937 | 3 | |
| Insertion | Chr9 | 16896304 | 16896307 | 2 | |
| Insertion | Chr10 | 8681609 | 8681611 | 1 |
Inversions: 5
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr11 | 4226779 | 4421064 | 2 |
| Inversion | Chr11 | 4226803 | 4421082 | 2 |
| Inversion | Chr4 | 14736272 | 15650768 | |
| Inversion | Chr6 | 29218846 | 29433277 | OsKitaake06g270300 |
| Inversion | Chr6 | 29218847 | 29433390 | OsKitaake06g270300 |
Translocations: 3
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 26952589 | Chr11 | 29611827 | 2 |
| Translocation | Chr6 | 29433274 | Chr1 | 10983955 | OsKitaake01g134900 |
| Translocation | Chr6 | 29433388 | Chr1 | 10983940 | OsKitaake01g134900 |