Search Kitaake

Mutant Information

Mutant Name	FN1548-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1548-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8910399 T-A Homo INTERGENIC
SBS Chr1 37868039 C-A Hetero INTRON
SBS Chr2 557846 C-T Homo INTERGENIC
SBS Chr2 5711958 G-A Homo INTERGENIC
SBS Chr2 9096067 A-C Hetero INTRON
SBS Chr2 16823321 A-G Hetero INTERGENIC
SBS Chr2 29430419 A-G Homo INTERGENIC
SBS Chr3 3372797 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g047700
SBS Chr3 12839969 C-A Hetero INTRON
SBS Chr3 32010717 G-A Hetero INTERGENIC
SBS Chr4 5271120 G-A Homo INTERGENIC
SBS Chr4 26194486 C-G Hetero INTRON
SBS Chr4 34232508 G-A Homo INTERGENIC
SBS Chr4 34232509 G-A Homo INTERGENIC
SBS Chr5 9165813 A-G Homo INTERGENIC
SBS Chr6 5949742 T-C Hetero INTERGENIC
SBS Chr6 11296447 G-A Hetero INTERGENIC
SBS Chr6 15489096 A-G Hetero INTERGENIC
SBS Chr6 20210303 C-G Hetero INTERGENIC
SBS Chr6 21102109 G-A Hetero INTERGENIC
SBS Chr6 24651747 T-A Hetero INTRON
SBS Chr6 24651748 T-A Hetero SPLICE_SITE_REGION
SBS Chr6 27767253 G-A Hetero INTERGENIC
SBS Chr7 16509001 T-C Hetero INTERGENIC
SBS Chr8 16750641 G-A Homo INTERGENIC
SBS Chr8 17541057 T-C Homo INTERGENIC
SBS Chr8 21026282 A-G Homo INTERGENIC
SBS Chr8 27938264 G-A Hetero INTERGENIC
SBS Chr9 5119003 G-A Homo INTERGENIC
SBS Chr9 5902922 G-A Homo INTERGENIC
SBS Chr9 5902923 C-T Homo INTERGENIC
SBS Chr9 15524475 G-A Hetero INTERGENIC
SBS Chr10 6205719 C-A Homo INTERGENIC
SBS Chr10 11768148 G-T Homo INTERGENIC
SBS Chr10 11768149 A-T Homo INTERGENIC
SBS Chr10 18508067 G-T Homo NON_SYNONYMOUS_CODING OsKitaake10g131400

Deletions: 50

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1046001 1111000 64999
Deletion Chr6 1071143 1071144 1
Deletion Chr5 1798475 1798485 10
Deletion Chr9 3051001 3067000 15999 OsKitaake09g016300
Deletion Chr6 4082067 4082074 7
Deletion Chr6 4124001 4157000 32999
Deletion Chr4 5824001 5854000 29999 4
Deletion Chr9 5836955 5836964 9
Deletion Chr11 5911507 5911508 1
Deletion Chr9 7433675 7433683 8
Deletion Chr9 7551001 7575000 23999 OsKitaake09g042900
Deletion Chr10 7601487 7601490 3
Deletion Chr11 7811001 7825000 13999 OsKitaake11g086800
Deletion Chr10 8326001 8345000 18999 2
Deletion Chr6 8724001 8747000 22999 OsKitaake06g106500
Deletion Chr12 8807001 8823000 15999 2
Deletion Chr1 9530478 9530479 1
Deletion Chr10 10341529 10341532 3
Deletion Chr11 10881001 10896000 14999 OsKitaake11g105800
Deletion Chr11 11113001 11127000 13999
Deletion Chr11 11184651 11184655 4
Deletion Chr4 12150001 12167000 16999
Deletion Chr6 12332001 12352000 19999 2
Deletion Chr9 12346001 12376000 29999
Deletion Chr5 12564001 12587000 22999
Deletion Chr12 12597001 12622000 24999 5
Deletion Chr10 12867001 12886000 18999 OsKitaake10g078500
Deletion Chr2 15582033 15582034 1
Deletion Chr3 16345001 16357000 11999 OsKitaake03g207501
Deletion Chr5 16822001 16843000 20999
Deletion Chr7 17483001 17506000 22999 OsKitaake07g142100
Deletion Chr1 18014635 18014720 85
Deletion Chr10 18362001 18649000 286999 30
Deletion Chr1 18922001 18941000 18999 2
Deletion Chr11 19042001 19065000 22999
Deletion Chr9 19897001 19908000 10999
Deletion Chr9 20042001 20059000 16999
Deletion Chr5 20554001 20569000 14999
Deletion Chr6 20603001 20621000 17999
Deletion Chr4 20655001 20687000 31999 2
Deletion Chr8 23516001 23563000 46999 OsKitaake08g181100
Deletion Chr2 23959001 23985000 25999 2
Deletion Chr12 24432751 24432756 5
Deletion Chr11 24520001 24547000 26999 3
Deletion Chr8 24788901 24788903 2
Deletion Chr3 25367001 25380000 12999
Deletion Chr5 25705001 25718000 12999 OsKitaake05g225800
Deletion Chr5 29398001 29416000 17999
Deletion Chr2 33223807 33223814 7
Deletion Chr1 36784045 36784047 2

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 2251060 2251063 2
Insertion Chr6 24860893 24860897 3
Insertion Chr12 9072331 9072334 2
Insertion Chr3 20043406 20043419 12
Insertion Chr5 16011110 16011112 1

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 1941438 1999269
Inversion Chr1 1941469 1999292
Inversion Chr7 18146668 18685989 OsKitaake07g152000
Inversion Chr7 18146671 18685990 OsKitaake07g152000

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 25490151 Chr8 24311735

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8910399	T-A	Homo	INTERGENIC
SBS	Chr1	37868039	C-A	Hetero	INTRON
SBS	Chr2	557846	C-T	Homo	INTERGENIC
SBS	Chr2	5711958	G-A	Homo	INTERGENIC
SBS	Chr2	9096067	A-C	Hetero	INTRON
SBS	Chr2	16823321	A-G	Hetero	INTERGENIC
SBS	Chr2	29430419	A-G	Homo	INTERGENIC
SBS	Chr3	3372797	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g047700
SBS	Chr3	12839969	C-A	Hetero	INTRON
SBS	Chr3	32010717	G-A	Hetero	INTERGENIC
SBS	Chr4	5271120	G-A	Homo	INTERGENIC
SBS	Chr4	26194486	C-G	Hetero	INTRON
SBS	Chr4	34232508	G-A	Homo	INTERGENIC
SBS	Chr4	34232509	G-A	Homo	INTERGENIC
SBS	Chr5	9165813	A-G	Homo	INTERGENIC
SBS	Chr6	5949742	T-C	Hetero	INTERGENIC
SBS	Chr6	11296447	G-A	Hetero	INTERGENIC
SBS	Chr6	15489096	A-G	Hetero	INTERGENIC
SBS	Chr6	20210303	C-G	Hetero	INTERGENIC
SBS	Chr6	21102109	G-A	Hetero	INTERGENIC
SBS	Chr6	24651747	T-A	Hetero	INTRON
SBS	Chr6	24651748	T-A	Hetero	SPLICE_SITE_REGION
SBS	Chr6	27767253	G-A	Hetero	INTERGENIC
SBS	Chr7	16509001	T-C	Hetero	INTERGENIC
SBS	Chr8	16750641	G-A	Homo	INTERGENIC
SBS	Chr8	17541057	T-C	Homo	INTERGENIC
SBS	Chr8	21026282	A-G	Homo	INTERGENIC
SBS	Chr8	27938264	G-A	Hetero	INTERGENIC
SBS	Chr9	5119003	G-A	Homo	INTERGENIC
SBS	Chr9	5902922	G-A	Homo	INTERGENIC
SBS	Chr9	5902923	C-T	Homo	INTERGENIC
SBS	Chr9	15524475	G-A	Hetero	INTERGENIC
SBS	Chr10	6205719	C-A	Homo	INTERGENIC
SBS	Chr10	11768148	G-T	Homo	INTERGENIC
SBS	Chr10	11768149	A-T	Homo	INTERGENIC
SBS	Chr10	18508067	G-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g131400

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1046001	1111000	64999
Deletion	Chr6	1071143	1071144	1
Deletion	Chr5	1798475	1798485	10
Deletion	Chr9	3051001	3067000	15999	OsKitaake09g016300
Deletion	Chr6	4082067	4082074	7
Deletion	Chr6	4124001	4157000	32999
Deletion	Chr4	5824001	5854000	29999	4
Deletion	Chr9	5836955	5836964	9
Deletion	Chr11	5911507	5911508	1
Deletion	Chr9	7433675	7433683	8
Deletion	Chr9	7551001	7575000	23999	OsKitaake09g042900
Deletion	Chr10	7601487	7601490	3
Deletion	Chr11	7811001	7825000	13999	OsKitaake11g086800
Deletion	Chr10	8326001	8345000	18999	2
Deletion	Chr6	8724001	8747000	22999	OsKitaake06g106500
Deletion	Chr12	8807001	8823000	15999	2
Deletion	Chr1	9530478	9530479	1
Deletion	Chr10	10341529	10341532	3
Deletion	Chr11	10881001	10896000	14999	OsKitaake11g105800
Deletion	Chr11	11113001	11127000	13999
Deletion	Chr11	11184651	11184655	4
Deletion	Chr4	12150001	12167000	16999
Deletion	Chr6	12332001	12352000	19999	2
Deletion	Chr9	12346001	12376000	29999
Deletion	Chr5	12564001	12587000	22999
Deletion	Chr12	12597001	12622000	24999	5
Deletion	Chr10	12867001	12886000	18999	OsKitaake10g078500
Deletion	Chr2	15582033	15582034	1
Deletion	Chr3	16345001	16357000	11999	OsKitaake03g207501
Deletion	Chr5	16822001	16843000	20999
Deletion	Chr7	17483001	17506000	22999	OsKitaake07g142100
Deletion	Chr1	18014635	18014720	85
Deletion	Chr10	18362001	18649000	286999	30
Deletion	Chr1	18922001	18941000	18999	2
Deletion	Chr11	19042001	19065000	22999
Deletion	Chr9	19897001	19908000	10999
Deletion	Chr9	20042001	20059000	16999
Deletion	Chr5	20554001	20569000	14999
Deletion	Chr6	20603001	20621000	17999
Deletion	Chr4	20655001	20687000	31999	2
Deletion	Chr8	23516001	23563000	46999	OsKitaake08g181100
Deletion	Chr2	23959001	23985000	25999	2
Deletion	Chr12	24432751	24432756	5
Deletion	Chr11	24520001	24547000	26999	3
Deletion	Chr8	24788901	24788903	2
Deletion	Chr3	25367001	25380000	12999
Deletion	Chr5	25705001	25718000	12999	OsKitaake05g225800
Deletion	Chr5	29398001	29416000	17999
Deletion	Chr2	33223807	33223814	7
Deletion	Chr1	36784045	36784047	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	1941438	1999269
Inversion	Chr1	1941469	1999292
Inversion	Chr7	18146668	18685989	OsKitaake07g152000
Inversion	Chr7	18146671	18685990	OsKitaake07g152000

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes