Search Kitaake

Mutant Information

Mutant Name	FN1552-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1552-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 33

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 886995 C-T Hetero INTERGENIC
SBS Chr1 2810221 G-A Hetero INTRON
SBS Chr2 6642284 A-C Hetero INTERGENIC
SBS Chr2 6790027 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g092600
SBS Chr2 19864800 T-C Hetero INTERGENIC
SBS Chr2 33948755 A-G Homo INTERGENIC
SBS Chr2 36823743 G-T Hetero UTR_3_PRIME
SBS Chr3 16751493 C-T Homo INTERGENIC
SBS Chr3 25809317 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g272200
SBS Chr3 26856913 A-C Hetero INTRON
SBS Chr3 31322713 G-A Homo INTERGENIC
SBS Chr3 35106656 T-G Homo INTERGENIC
SBS Chr4 2855299 C-G Hetero INTERGENIC
SBS Chr4 14154179 G-A Homo NON_SYNONYMOUS_CODING OsKitaake04g067700
SBS Chr4 23455069 G-A Hetero INTERGENIC
SBS Chr4 25829930 C-A Homo INTERGENIC
SBS Chr4 27209128 C-A Hetero INTERGENIC
SBS Chr4 32193876 G-A Homo INTRON
SBS Chr5 6781576 C-T Hetero INTRON
SBS Chr5 15151747 C-A Homo INTERGENIC
SBS Chr5 23126688 G-A Hetero STOP_GAINED OsKitaake05g192800
SBS Chr5 26823305 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g239600
SBS Chr6 6337430 G-A Homo INTERGENIC
SBS Chr6 23533761 G-A Hetero UTR_3_PRIME
SBS Chr6 24172983 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g214400
SBS Chr7 11065943 G-A Hetero INTERGENIC
SBS Chr8 7421214 T-C Hetero INTERGENIC
SBS Chr9 15104029 T-A Hetero INTRON
SBS Chr9 17423465 G-A Homo INTERGENIC
SBS Chr11 16723944 A-G Homo INTERGENIC
SBS Chr11 19659961 T-C Homo INTERGENIC
SBS Chr11 24896637 T-A Hetero INTERGENIC
SBS Chr11 28781240 T-A Hetero INTRON

Deletions: 29

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 331382 331390 8
Deletion Chr9 1057001 1096000 38999
Deletion Chr6 2579773 2579781 8
Deletion Chr9 3050001 3072000 21999 OsKitaake09g016300
Deletion Chr2 4717001 4774000 56999 10
Deletion Chr6 6237729 6237731 2
Deletion Chr11 6910001 6938000 27999 3
Deletion Chr4 7530614 7530626 12
Deletion Chr12 9071001 9080000 8999 OsKitaake12g090132
Deletion Chr11 9802937 9802938 1
Deletion Chr5 12563001 12585000 21999
Deletion Chr12 12570001 12621000 50999 7
Deletion Chr6 15679957 15679959 2
Deletion Chr3 16346001 16356000 9999 OsKitaake03g207501
Deletion Chr2 16366001 16380000 13999 OsKitaake02g167900
Deletion Chr3 19277001 19322000 44999
Deletion Chr12 20580631 20580632 1
Deletion Chr5 21743053 21743058 5
Deletion Chr4 23116001 23142000 25999 OsKitaake04g140900
Deletion Chr6 23910670 23910671 1
Deletion Chr6 24028001 24044000 15999
Deletion Chr1 24135706 24135713 7
Deletion Chr12 24215001 24236000 20999 OsKitaake12g195000
Deletion Chr4 24418542 24418543 1
Deletion Chr11 24530001 24543000 12999 OsKitaake11g197800
Deletion Chr11 25471001 25484000 12999 OsKitaake11g205300
Deletion Chr6 25827690 25827696 6
Deletion Chr11 29189001 29248000 58999 5
Deletion Chr3 30319001 30335000 15999 OsKitaake03g318300

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 5565457 5565460 2
Insertion Chr1 32749154 32749156 1

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 22411893 Chr3 19323436 OsKitaake08g170900
Translocation Chr8 22411940 Chr3 19321984 OsKitaake08g170900
Translocation Chr11 29188105 Chr5 18641178 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	886995	C-T	Hetero	INTERGENIC
SBS	Chr1	2810221	G-A	Hetero	INTRON
SBS	Chr2	6642284	A-C	Hetero	INTERGENIC
SBS	Chr2	6790027	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g092600
SBS	Chr2	19864800	T-C	Hetero	INTERGENIC
SBS	Chr2	33948755	A-G	Homo	INTERGENIC
SBS	Chr2	36823743	G-T	Hetero	UTR_3_PRIME
SBS	Chr3	16751493	C-T	Homo	INTERGENIC
SBS	Chr3	25809317	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g272200
SBS	Chr3	26856913	A-C	Hetero	INTRON
SBS	Chr3	31322713	G-A	Homo	INTERGENIC
SBS	Chr3	35106656	T-G	Homo	INTERGENIC
SBS	Chr4	2855299	C-G	Hetero	INTERGENIC
SBS	Chr4	14154179	G-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g067700
SBS	Chr4	23455069	G-A	Hetero	INTERGENIC
SBS	Chr4	25829930	C-A	Homo	INTERGENIC
SBS	Chr4	27209128	C-A	Hetero	INTERGENIC
SBS	Chr4	32193876	G-A	Homo	INTRON
SBS	Chr5	6781576	C-T	Hetero	INTRON
SBS	Chr5	15151747	C-A	Homo	INTERGENIC
SBS	Chr5	23126688	G-A	Hetero	STOP_GAINED	OsKitaake05g192800
SBS	Chr5	26823305	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g239600
SBS	Chr6	6337430	G-A	Homo	INTERGENIC
SBS	Chr6	23533761	G-A	Hetero	UTR_3_PRIME
SBS	Chr6	24172983	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g214400
SBS	Chr7	11065943	G-A	Hetero	INTERGENIC
SBS	Chr8	7421214	T-C	Hetero	INTERGENIC
SBS	Chr9	15104029	T-A	Hetero	INTRON
SBS	Chr9	17423465	G-A	Homo	INTERGENIC
SBS	Chr11	16723944	A-G	Homo	INTERGENIC
SBS	Chr11	19659961	T-C	Homo	INTERGENIC
SBS	Chr11	24896637	T-A	Hetero	INTERGENIC
SBS	Chr11	28781240	T-A	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	331382	331390	8
Deletion	Chr9	1057001	1096000	38999
Deletion	Chr6	2579773	2579781	8
Deletion	Chr9	3050001	3072000	21999	OsKitaake09g016300
Deletion	Chr2	4717001	4774000	56999	10
Deletion	Chr6	6237729	6237731	2
Deletion	Chr11	6910001	6938000	27999	3
Deletion	Chr4	7530614	7530626	12
Deletion	Chr12	9071001	9080000	8999	OsKitaake12g090132
Deletion	Chr11	9802937	9802938	1
Deletion	Chr5	12563001	12585000	21999
Deletion	Chr12	12570001	12621000	50999	7
Deletion	Chr6	15679957	15679959	2
Deletion	Chr3	16346001	16356000	9999	OsKitaake03g207501
Deletion	Chr2	16366001	16380000	13999	OsKitaake02g167900
Deletion	Chr3	19277001	19322000	44999
Deletion	Chr12	20580631	20580632	1
Deletion	Chr5	21743053	21743058	5
Deletion	Chr4	23116001	23142000	25999	OsKitaake04g140900
Deletion	Chr6	23910670	23910671	1
Deletion	Chr6	24028001	24044000	15999
Deletion	Chr1	24135706	24135713	7
Deletion	Chr12	24215001	24236000	20999	OsKitaake12g195000
Deletion	Chr4	24418542	24418543	1
Deletion	Chr11	24530001	24543000	12999	OsKitaake11g197800
Deletion	Chr11	25471001	25484000	12999	OsKitaake11g205300
Deletion	Chr6	25827690	25827696	6
Deletion	Chr11	29189001	29248000	58999	5
Deletion	Chr3	30319001	30335000	15999	OsKitaake03g318300

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	22411893	Chr3	19323436	OsKitaake08g170900
Translocation	Chr8	22411940	Chr3	19321984	OsKitaake08g170900
Translocation	Chr11	29188105	Chr5	18641178	2

Main menu

You are here

Search Kitaake

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes