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Mutant Information

Mutant Name	FN1554-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1554-S Alignment File
Seed Availability	No

Variant Information

Single base substitutions: 25

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17310206	C-T	Homo	INTERGENIC
SBS	Chr1	26463461	G-A	Homo	INTERGENIC
SBS	Chr2	12854330	C-A	Hetero	INTERGENIC
SBS	Chr2	31941861	C-T	Hetero	INTERGENIC
SBS	Chr3	1434869	C-T	Homo	INTERGENIC
SBS	Chr3	10471383	G-T	Homo	INTERGENIC
SBS	Chr3	17561403	G-T	Homo	INTERGENIC
SBS	Chr4	624005	C-T	Hetero	UTR_5_PRIME
SBS	Chr4	4179158	T-A	Hetero	INTRON
SBS	Chr4	27892868	T-C	Hetero	INTERGENIC
SBS	Chr4	27984207	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g208200
SBS	Chr5	7484558	G-A	Hetero	UTR_3_PRIME
SBS	Chr5	15764591	T-G	Homo	INTRON
SBS	Chr7	1246508	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	1187642	G-C	Homo	INTERGENIC
SBS	Chr8	8990916	G-T	Homo	INTERGENIC
SBS	Chr9	18978484	G-A	Homo	INTRON
SBS	Chr9	18978485	C-A	Homo	INTRON
SBS	Chr10	2079525	T-A	Homo	INTERGENIC
SBS	Chr11	885679	C-A	Hetero	INTRON
SBS	Chr11	6416857	C-T	Hetero	INTERGENIC
SBS	Chr11	19148591	C-T	Hetero	INTERGENIC
SBS	Chr11	19585875	A-T	Hetero	INTERGENIC
SBS	Chr12	11604841	G-A	Hetero	INTERGENIC
SBS	Chr12	16972917	A-G	Hetero	INTERGENIC

Deletions: 18

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	623979	623989	10
Deletion	Chr3	656331	656332	1
Deletion	Chr8	1188001	1230000	41999	5
Deletion	Chr12	2141001	2152000	10999
Deletion	Chr12	2996892	2996897	5
Deletion	Chr11	5911507	5911508	1
Deletion	Chr12	7803500	7803501	1
Deletion	Chr1	7819461	7819463	2
Deletion	Chr3	10218216	10218223	7
Deletion	Chr11	13415809	13415825	16	OsKitaake11g115300
Deletion	Chr6	16473326	16473328	2
Deletion	Chr6	16913001	17123000	209999	14
Deletion	Chr10	18667883	18667885	2
Deletion	Chr3	18804213	18804219	6
Deletion	Chr9	19508418	19508420	2
Deletion	Chr8	28106001	28123000	16999	OsKitaake08g236400
Deletion	Chr11	28592568	28592578	10
Deletion	Chr3	30558354	30558363	9	OsKitaake03g320800

Insertions: 9

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Insertion	Chr1	37335280	37335283	2	OsKitaake01g398401
Insertion	Chr3	4981069	4981072	2
Insertion	Chr7	7869595	7869598	2
Insertion	Chr8	14495922	14495925	2
Insertion	Chr11	20370333	20370336	2
Insertion	Chr1	17222099	17222101	1
Insertion	Chr2	13756014	13756016	1
Insertion	Chr4	9890301	9890364	62
Insertion	Chr9	2667591	2667595	3

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	21891436	22029757

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr11	2906950	Chr7	21891431	OsKitaake11g041100
Translocation	Chr11	26380243	Chr9	20362549
Translocation	Chr11	26380521	Chr9	19707061	OsKitaake09g161900