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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN1568-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1568-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5456033 T-C Hetero INTERGENIC
SBS Chr1 9229413 A-C Homo INTERGENIC
SBS Chr1 14427157 T-A Hetero INTERGENIC
SBS Chr1 27514879 C-T Homo NON_SYNONYMOUS_CODING OsKitaake01g267800
SBS Chr1 33160567 G-A Hetero INTRON
SBS Chr1 37377041 C-T Homo INTERGENIC
SBS Chr2 9837207 G-T Hetero INTERGENIC
SBS Chr2 11132503 A-T Hetero INTERGENIC
SBS Chr2 12396737 G-A Hetero INTERGENIC
SBS Chr2 14157783 T-A Hetero INTERGENIC
SBS Chr2 34997188 T-C Homo INTERGENIC
SBS Chr3 1948609 A-T Homo INTERGENIC
SBS Chr3 9603021 T-C Hetero INTERGENIC
SBS Chr3 23656769 A-G Hetero INTERGENIC
SBS Chr3 26291350 G-A Hetero INTERGENIC
SBS Chr4 33707654 A-G Hetero INTRON
SBS Chr5 11397460 T-A Hetero INTERGENIC
SBS Chr6 4631047 A-G Homo UTR_3_PRIME
SBS Chr7 1739852 C-A Hetero INTRON
SBS Chr7 2347385 T-C Hetero INTERGENIC
SBS Chr7 5377500 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake07g065300
SBS Chr7 8682002 A-T Hetero INTERGENIC
SBS Chr7 15020527 T-C Hetero INTERGENIC
SBS Chr8 8779567 C-A Homo INTERGENIC
SBS Chr8 8779570 C-A Homo INTERGENIC
SBS Chr8 9807144 C-T Hetero INTERGENIC
SBS Chr8 16266214 C-T Hetero INTRON
SBS Chr8 16450601 C-T Hetero INTERGENIC
SBS Chr8 16451390 G-A Homo INTERGENIC
SBS Chr9 4173413 G-A Hetero INTERGENIC
SBS Chr9 5636003 G-T Homo INTERGENIC
SBS Chr10 1888345 A-T Hetero INTERGENIC
SBS Chr10 2135439 G-T Hetero INTERGENIC
SBS Chr11 18053142 G-T Homo INTERGENIC
SBS Chr11 19190945 T-C Homo INTERGENIC
SBS Chr11 20086396 T-G Homo INTERGENIC
SBS Chr12 14650542 C-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2089297 2089299 2
Deletion Chr10 4838411 4838412 1
Deletion Chr10 8654782 8654829 47 OsKitaake10g053166
Deletion Chr4 8697922 8697923 1
Deletion Chr10 10425190 10425192 2
Deletion Chr8 11620742 11620747 5
Deletion Chr11 13080903 13080911 8
Deletion Chr8 14426393 14426410 17
Deletion Chr9 15474294 15474302 8
Deletion Chr4 18256283 18256292 9
Deletion Chr11 24532781 24532793 12
Deletion Chr1 33369791 33369806 15

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 31079356 31079359 2
Insertion Chr1 36591187 36591190 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 8400362 8654199
Inversion Chr7 18555226 19265408
Inversion Chr7 18555245 19265410

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5456033	T-C	Hetero	INTERGENIC
SBS	Chr1	9229413	A-C	Homo	INTERGENIC
SBS	Chr1	14427157	T-A	Hetero	INTERGENIC
SBS	Chr1	27514879	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake01g267800
SBS	Chr1	33160567	G-A	Hetero	INTRON
SBS	Chr1	37377041	C-T	Homo	INTERGENIC
SBS	Chr2	9837207	G-T	Hetero	INTERGENIC
SBS	Chr2	11132503	A-T	Hetero	INTERGENIC
SBS	Chr2	12396737	G-A	Hetero	INTERGENIC
SBS	Chr2	14157783	T-A	Hetero	INTERGENIC
SBS	Chr2	34997188	T-C	Homo	INTERGENIC
SBS	Chr3	1948609	A-T	Homo	INTERGENIC
SBS	Chr3	9603021	T-C	Hetero	INTERGENIC
SBS	Chr3	23656769	A-G	Hetero	INTERGENIC
SBS	Chr3	26291350	G-A	Hetero	INTERGENIC
SBS	Chr4	33707654	A-G	Hetero	INTRON
SBS	Chr5	11397460	T-A	Hetero	INTERGENIC
SBS	Chr6	4631047	A-G	Homo	UTR_3_PRIME
SBS	Chr7	1739852	C-A	Hetero	INTRON
SBS	Chr7	2347385	T-C	Hetero	INTERGENIC
SBS	Chr7	5377500	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g065300
SBS	Chr7	8682002	A-T	Hetero	INTERGENIC
SBS	Chr7	15020527	T-C	Hetero	INTERGENIC
SBS	Chr8	8779567	C-A	Homo	INTERGENIC
SBS	Chr8	8779570	C-A	Homo	INTERGENIC
SBS	Chr8	9807144	C-T	Hetero	INTERGENIC
SBS	Chr8	16266214	C-T	Hetero	INTRON
SBS	Chr8	16450601	C-T	Hetero	INTERGENIC
SBS	Chr8	16451390	G-A	Homo	INTERGENIC
SBS	Chr9	4173413	G-A	Hetero	INTERGENIC
SBS	Chr9	5636003	G-T	Homo	INTERGENIC
SBS	Chr10	1888345	A-T	Hetero	INTERGENIC
SBS	Chr10	2135439	G-T	Hetero	INTERGENIC
SBS	Chr11	18053142	G-T	Homo	INTERGENIC
SBS	Chr11	19190945	T-C	Homo	INTERGENIC
SBS	Chr11	20086396	T-G	Homo	INTERGENIC
SBS	Chr12	14650542	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2089297	2089299	2
Deletion	Chr10	4838411	4838412	1
Deletion	Chr10	8654782	8654829	47	OsKitaake10g053166
Deletion	Chr4	8697922	8697923	1
Deletion	Chr10	10425190	10425192	2
Deletion	Chr8	11620742	11620747	5
Deletion	Chr11	13080903	13080911	8
Deletion	Chr8	14426393	14426410	17
Deletion	Chr9	15474294	15474302	8
Deletion	Chr4	18256283	18256292	9
Deletion	Chr11	24532781	24532793	12
Deletion	Chr1	33369791	33369806	15

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	8400362	8654199
Inversion	Chr7	18555226	19265408
Inversion	Chr7	18555245	19265410

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes