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Mutant Information

Mutant Name	FN1573-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN1573-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 59

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3303349 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g043200
SBS Chr1 12740852 A-T Hetero INTERGENIC
SBS Chr1 16484590 A-G Hetero INTERGENIC
SBS Chr1 16988003 T-C Hetero INTERGENIC
SBS Chr1 29378704 T-C Homo UTR_3_PRIME
SBS Chr1 30627101 G-A Homo INTERGENIC
SBS Chr1 32874243 G-A Hetero INTERGENIC
SBS Chr1 33862670 C-T Hetero INTERGENIC
SBS Chr1 34080233 A-G Hetero SYNONYMOUS_CODING
SBS Chr1 36927641 G-A Hetero INTERGENIC
SBS Chr1 37911343 G-A Hetero INTERGENIC
SBS Chr1 41907173 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g459000
SBS Chr2 12013478 C-T Hetero INTERGENIC
SBS Chr2 13054817 C-T Hetero INTERGENIC
SBS Chr2 16202087 C-T Hetero INTERGENIC
SBS Chr2 21311185 T-C Homo INTERGENIC
SBS Chr2 34106802 C-G Homo INTERGENIC
SBS Chr3 2990543 G-A Homo INTERGENIC
SBS Chr3 13889964 C-T Hetero INTERGENIC
SBS Chr3 14011434 G-T Hetero INTERGENIC
SBS Chr3 16455911 T-G Homo INTERGENIC
SBS Chr4 1056717 C-T Homo INTRON
SBS Chr4 4522926 T-A Hetero INTERGENIC
SBS Chr4 21303283 C-A Hetero INTERGENIC
SBS Chr4 28256427 T-G Homo INTERGENIC
SBS Chr5 2258284 C-T Homo INTERGENIC
SBS Chr5 4736016 G-T Hetero INTERGENIC
SBS Chr5 9936760 G-C Hetero INTERGENIC
SBS Chr5 11262337 C-T Hetero INTERGENIC
SBS Chr5 15810122 G-A Hetero INTRON
SBS Chr5 15810123 G-A Hetero INTRON
SBS Chr5 28324789 T-C Hetero INTRON
SBS Chr6 3231134 T-C Hetero INTERGENIC
SBS Chr6 20133873 G-A Hetero INTERGENIC
SBS Chr7 2282607 G-A Hetero INTERGENIC
SBS Chr7 9804634 A-T Hetero INTERGENIC
SBS Chr7 13857812 G-A Hetero INTERGENIC
SBS Chr7 13857814 C-A Hetero INTERGENIC
SBS Chr7 23694177 C-T Hetero INTERGENIC
SBS Chr8 602670 G-A Hetero INTERGENIC
SBS Chr8 602671 T-G Hetero INTERGENIC
SBS Chr8 17004625 G-A Hetero SYNONYMOUS_CODING
SBS Chr8 19834455 T-C Hetero INTERGENIC
SBS Chr9 7424088 T-C Hetero INTERGENIC
SBS Chr9 11379480 C-T Homo INTERGENIC
SBS Chr9 14869672 T-A Hetero INTERGENIC
SBS Chr10 8036917 A-G Hetero INTERGENIC
SBS Chr10 10301529 A-C Hetero INTERGENIC
SBS Chr10 13775947 G-A Homo INTERGENIC
SBS Chr10 15897839 C-T Homo INTERGENIC
SBS Chr10 19963905 A-G Hetero INTERGENIC
SBS Chr11 5392238 T-G Hetero INTERGENIC
SBS Chr11 6726271 T-C Hetero INTERGENIC
SBS Chr11 9202512 G-T Hetero INTERGENIC
SBS Chr11 27875876 G-C Hetero INTERGENIC
SBS Chr12 5686615 C-T Hetero INTERGENIC
SBS Chr12 15113266 A-T Hetero INTERGENIC
SBS Chr12 15113267 A-T Hetero INTERGENIC
SBS Chr12 19669123 C-T Homo INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1064451 1064462 11
Deletion Chr3 1674234 1674244 10 OsKitaake03g023750
Deletion Chr5 3151422 3151432 10
Deletion Chr1 3303289 3303293 4 OsKitaake01g043200
Deletion Chr1 8951349 8951354 5
Deletion Chr11 9522746 9522747 1
Deletion Chr6 9713438 9713439 1
Deletion Chr5 10928001 10937000 8999
Deletion Chr11 12103939 12103940 1
Deletion Chr8 13673366 13673367 1
Deletion Chr9 19494096 19494110 14
Deletion Chr4 19650263 19650264 1
Deletion Chr7 20878746 20878751 5 OsKitaake07g172300
Deletion Chr6 27120836 27120848 12
Deletion Chr2 34820016 34820017 1
Deletion Chr1 35988566 35988582 16
Deletion Chr1 37818689 37818692 3

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 3924524 3924527 2
Insertion Chr10 3785395 3785398 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 1390630 2208471
Inversion Chr6 25076567 25780872
Inversion Chr6 25780875 25787639 OsKitaake06g229300

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 73838 Chr7 20893609 OsKitaake10g000300
Translocation Chr10 1390637 Chr7 20973554

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3303349	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g043200
SBS	Chr1	12740852	A-T	Hetero	INTERGENIC
SBS	Chr1	16484590	A-G	Hetero	INTERGENIC
SBS	Chr1	16988003	T-C	Hetero	INTERGENIC
SBS	Chr1	29378704	T-C	Homo	UTR_3_PRIME
SBS	Chr1	30627101	G-A	Homo	INTERGENIC
SBS	Chr1	32874243	G-A	Hetero	INTERGENIC
SBS	Chr1	33862670	C-T	Hetero	INTERGENIC
SBS	Chr1	34080233	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr1	36927641	G-A	Hetero	INTERGENIC
SBS	Chr1	37911343	G-A	Hetero	INTERGENIC
SBS	Chr1	41907173	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g459000
SBS	Chr2	12013478	C-T	Hetero	INTERGENIC
SBS	Chr2	13054817	C-T	Hetero	INTERGENIC
SBS	Chr2	16202087	C-T	Hetero	INTERGENIC
SBS	Chr2	21311185	T-C	Homo	INTERGENIC
SBS	Chr2	34106802	C-G	Homo	INTERGENIC
SBS	Chr3	2990543	G-A	Homo	INTERGENIC
SBS	Chr3	13889964	C-T	Hetero	INTERGENIC
SBS	Chr3	14011434	G-T	Hetero	INTERGENIC
SBS	Chr3	16455911	T-G	Homo	INTERGENIC
SBS	Chr4	1056717	C-T	Homo	INTRON
SBS	Chr4	4522926	T-A	Hetero	INTERGENIC
SBS	Chr4	21303283	C-A	Hetero	INTERGENIC
SBS	Chr4	28256427	T-G	Homo	INTERGENIC
SBS	Chr5	2258284	C-T	Homo	INTERGENIC
SBS	Chr5	4736016	G-T	Hetero	INTERGENIC
SBS	Chr5	9936760	G-C	Hetero	INTERGENIC
SBS	Chr5	11262337	C-T	Hetero	INTERGENIC
SBS	Chr5	15810122	G-A	Hetero	INTRON
SBS	Chr5	15810123	G-A	Hetero	INTRON
SBS	Chr5	28324789	T-C	Hetero	INTRON
SBS	Chr6	3231134	T-C	Hetero	INTERGENIC
SBS	Chr6	20133873	G-A	Hetero	INTERGENIC
SBS	Chr7	2282607	G-A	Hetero	INTERGENIC
SBS	Chr7	9804634	A-T	Hetero	INTERGENIC
SBS	Chr7	13857812	G-A	Hetero	INTERGENIC
SBS	Chr7	13857814	C-A	Hetero	INTERGENIC
SBS	Chr7	23694177	C-T	Hetero	INTERGENIC
SBS	Chr8	602670	G-A	Hetero	INTERGENIC
SBS	Chr8	602671	T-G	Hetero	INTERGENIC
SBS	Chr8	17004625	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	19834455	T-C	Hetero	INTERGENIC
SBS	Chr9	7424088	T-C	Hetero	INTERGENIC
SBS	Chr9	11379480	C-T	Homo	INTERGENIC
SBS	Chr9	14869672	T-A	Hetero	INTERGENIC
SBS	Chr10	8036917	A-G	Hetero	INTERGENIC
SBS	Chr10	10301529	A-C	Hetero	INTERGENIC
SBS	Chr10	13775947	G-A	Homo	INTERGENIC
SBS	Chr10	15897839	C-T	Homo	INTERGENIC
SBS	Chr10	19963905	A-G	Hetero	INTERGENIC
SBS	Chr11	5392238	T-G	Hetero	INTERGENIC
SBS	Chr11	6726271	T-C	Hetero	INTERGENIC
SBS	Chr11	9202512	G-T	Hetero	INTERGENIC
SBS	Chr11	27875876	G-C	Hetero	INTERGENIC
SBS	Chr12	5686615	C-T	Hetero	INTERGENIC
SBS	Chr12	15113266	A-T	Hetero	INTERGENIC
SBS	Chr12	15113267	A-T	Hetero	INTERGENIC
SBS	Chr12	19669123	C-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1064451	1064462	11
Deletion	Chr3	1674234	1674244	10	OsKitaake03g023750
Deletion	Chr5	3151422	3151432	10
Deletion	Chr1	3303289	3303293	4	OsKitaake01g043200
Deletion	Chr1	8951349	8951354	5
Deletion	Chr11	9522746	9522747	1
Deletion	Chr6	9713438	9713439	1
Deletion	Chr5	10928001	10937000	8999
Deletion	Chr11	12103939	12103940	1
Deletion	Chr8	13673366	13673367	1
Deletion	Chr9	19494096	19494110	14
Deletion	Chr4	19650263	19650264	1
Deletion	Chr7	20878746	20878751	5	OsKitaake07g172300
Deletion	Chr6	27120836	27120848	12
Deletion	Chr2	34820016	34820017	1
Deletion	Chr1	35988566	35988582	16
Deletion	Chr1	37818689	37818692	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1390630	2208471
Inversion	Chr6	25076567	25780872
Inversion	Chr6	25780875	25787639	OsKitaake06g229300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes